BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0209.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase s...   325   1e-90
gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit ...    94   5e-21

>gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase
           subunit alpha oxidoreductase [Herbaspirillum seropedicae
           SmR1]
          Length = 160

 Score =  325 bits (832), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MHKQEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAA 60
           MHKQEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAA
Sbjct: 1   MHKQEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAA 60

Query: 61  RSCVIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRS 120
           RSCVIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRS
Sbjct: 61  RSCVIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRS 120

Query: 121 PTPSEDEIRHELDFNLCRCGTHVEILRAALRAVELQRGRQ 160
           PTPSEDEIRHELDFNLCRCGTHVEILRAALRAVELQRGRQ
Sbjct: 121 PTPSEDEIRHELDFNLCRCGTHVEILRAALRAVELQRGRQ 160


>gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit A
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score = 94.0 bits (232), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 89/167 (53%), Gaps = 18/167 (10%)

Query: 7   ITFHVNGVPVSLDIAADAP---LLNVLRNDLCLNGPKFGCGLGECGACTVLVDGV----- 58
           I F+  G   S  +A  +P   +L  LR DL   G K GC  G+CGACTV+V  +     
Sbjct: 8   IQFYFRGQTHS--VAGHSPTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGELQGEQL 65

Query: 59  ---AARSCVIPLAGVAARHVTTLDGLEQ-DGRLDPVQQAFIDEQGAQCGYCLNGMIMTIK 114
                 +C+  L  +  R + T++ L+Q DG L PVQQA ++  G+QCG+C  G +M++ 
Sbjct: 66  ALKTVNACIQFLPTLDGRALFTVEDLKQADGSLHPVQQAMVECHGSQCGFCTPGFVMSLW 125

Query: 115 ALLLRSP----TPSEDEIRHELDFNLCRCGTHVEILRAALRAVELQR 157
            L LR      TPS+ EI   L  NLCRC  +  I+ AA R  EL +
Sbjct: 126 GLYLRHEQDGVTPSKREIDDALSGNLCRCTGYRPIIDAARRMGELPK 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.141    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 507,215
Number of extensions: 20243
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 127 (53.5 bits)