BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0207.p
         (283 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310656|ref|YP_003774748.1| alpha/beta hydrolase superfamil...   557   e-160
gi|300313233|ref|YP_003777325.1| alpha/beta hydrolase superfamil...    73   2e-14

>gi|300310656|ref|YP_003774748.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  557 bits (1435), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/277 (98%), Positives = 274/277 (98%)

Query: 1   MHSHSSSFLYGANVQANGIRQHYLRYGGNDGARASRDAVIILPGITSPAVTWGFVGERFG 60
           MHSHSSSFLYGANVQANGIRQHYLRYGGNDGARASRDAVIILPGITSPAVTWGFVGERFG
Sbjct: 1   MHSHSSSFLYGANVQANGIRQHYLRYGGNDGARASRDAVIILPGITSPAVTWGFVGERFG 60

Query: 61  QQFDTYVLDVRGRGLSSASDTLDYSVDAQAADVVALAQALGLSRYAIVGHSMGARIGARA 120
           QQFDTYVLDVRGRGLSSASDTLDYSVDAQAADV+ALAQALGLSRYAIVGHSMGARIGARA
Sbjct: 61  QQFDTYVLDVRGRGLSSASDTLDYSVDAQAADVIALAQALGLSRYAIVGHSMGARIGARA 120

Query: 121 ACQAPQGLTRLVMVDPPVSGPGRRAYPSKLPWYVDSMRLARAGCSAEQMRAFCATWTEEQ 180
           A Q PQGLTRLVMVDPPVSGPGRRAYPSKLPWYVDSMRLARAGCSAEQMRAFCATWTEEQ
Sbjct: 121 ARQTPQGLTRLVMVDPPVSGPGRRAYPSKLPWYVDSMRLARAGCSAEQMRAFCATWTEEQ 180

Query: 181 LQLRAEWLHTCDERAVIASFEEFHTGDFHADLPALRLPVMLMQASRGDVILPEDVAEIRS 240
           LQLRAEWLHTCDERAVIASFEEFHTGDFHADLPALRLPVMLMQASRGDVILPEDVAEIRS
Sbjct: 181 LQLRAEWLHTCDERAVIASFEEFHTGDFHADLPALRLPVMLMQASRGDVILPEDVAEIRS 240

Query: 241 LLPQVVVSRVEEAGHMIPWDNEAGFYAAFGDFLGATL 277
           LLPQVVVSRVEEAGHMIPWDNEAGFYAAF DFLGATL
Sbjct: 241 LLPQVVVSRVEEAGHMIPWDNEAGFYAAFRDFLGATL 277


>gi|300313233|ref|YP_003777325.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score = 73.2 bits (178), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 108/258 (41%), Gaps = 31/258 (12%)

Query: 39  VIILPGITSPAVTWGFVGERFGQQFDTYVLDVRGRGLSSASDTLDYSVDAQAADVVALAQ 98
           +++L GI     T+G + +R    +    LD RGRG S      +Y  DA  ADV AL  
Sbjct: 28  LLLLHGIRGYGETFGDLAQRLPPGYRCIALDQRGRGQSDWDAGANYYTDAYVADVEALVA 87

Query: 99  ALGLSRYAIVGHSMGARIGARAACQAPQGLTRLVMVDPPVSGPGRRAYPS-------KLP 151
            L L ++ ++GHSMG       A + P  + RL++ D   +GPG  A+ +       +  
Sbjct: 88  RLNLRQFDLLGHSMGGINAIVYAARHPAKVRRLIIED---AGPG--AFENSPGATRIRRE 142

Query: 152 WYVDSMRLARAGCSAEQMRAFCATWTEEQLQLRAEWLHTCDERAVIASF--EEFHTG--- 206
                   A    ++  MRA   + TEE  Q R   LH   + A    +     H G   
Sbjct: 143 LATTPSHFASWDEASTFMRALRPSVTEEARQQR---LHNMLKPAAQGGYTWRYDHVGISS 199

Query: 207 -----------DFHADLPALRLPVMLMQASRGDVILPEDVAEIRSLLPQVVVSRVEEAGH 255
                      D    + AL  P ++++  R D +  E  AE+R L  +++ S + +AGH
Sbjct: 200 TRLSPDLSRVVDLRPHIMALMCPTLVVRGERSDYLSAEMAAEMRQLNARILTSTIADAGH 259

Query: 256 MIPWDNEAGFYAAFGDFL 273
            I  D    F      FL
Sbjct: 260 YIHDDQPEAFAEVVRQFL 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 893,068
Number of extensions: 36624
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 283
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,222,130
Effective search space: 243203870
Effective search space used: 243203870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)