BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0204.p (723 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310659|ref|YP_003774751.1| aerobic-type carbon monoxide de... 1434 0.0 gi|300310653|ref|YP_003774745.1| cytochrome protein [Herbaspiril... 126 6e-30 >gi|300310659|ref|YP_003774751.1| aerobic-type carbon monoxide dehydrogenase large subunit [Herbaspirillum seropedicae SmR1] Length = 759 Score = 1434 bits (3713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 718/725 (99%), Positives = 720/725 (99%), Gaps = 2/725 (0%) Query: 1 VKPAPGQPGAASSYVQPLPDVFVAILGEGQVLAFNGHVDLGTGIRTSLAQIVAEELSLSM 60 VKPAPGQPGAASSYVQPLPDVFVAILGEGQVLAFNGHVDLGTGIRTSLAQIVAEELSLSM Sbjct: 35 VKPAPGQPGAASSYVQPLPDVFVAILGEGQVLAFNGHVDLGTGIRTSLAQIVAEELSLSM 94 Query: 61 EQVSMILGHTEEAPNQGPTIASATIQISAMPLRKAAAQAREHLLAMAAARWATSVGRLRV 120 EQVSMILGHTEEAPNQGPTIASATIQISAMPLRKAAAQAREHLLAMAAARWAT VGRLRV Sbjct: 95 EQVSMILGHTEEAPNQGPTIASATIQISAMPLRKAAAQAREHLLAMAAARWATPVGRLRV 154 Query: 121 EAGCIIDADVAGRTISYFELLRGQRIVLTLESGEVPLKPVSQYTLVGRSSQRVDIPAKVR 180 EAGCIIDADVAGRTISYFELLRGQRIVLTLE GEVPLKPVSQYTLVGRSSQRVDIPAKVR Sbjct: 155 EAGCIIDADVAGRTISYFELLRGQRIVLTLEPGEVPLKPVSQYTLVGRSSQRVDIPAKVR 214 Query: 181 AQPVYVHDVRVPGMLHGRVVRPPHPGRDGGDFVGRSLLAVDRQSVAHLPGLVAVVVEGDF 240 AQPVYVHDVRVPGMLHGRVVRPPHPGRDGGDFVGRSLLAVDRQSVAH+PGLVAVVVEGDF Sbjct: 215 AQPVYVHDVRVPGMLHGRVVRPPHPGRDGGDFVGRSLLAVDRQSVAHIPGLVAVVVEGDF 274 Query: 241 IGVVAEREEQAQRAMRELKVQWKSIPPLPPMDDLEARLRSLPARRRELVRQGDPDAASAA 300 IGVVAEREEQAQRAMRELKVQWKSIPPLPPMDDLEARLRSLPARRRELVRQGDPDAASA+ Sbjct: 275 IGVVAEREEQAQRAMRELKVQWKSIPPLPPMDDLEARLRSLPARRRELVRQGDPDAASAS 334 Query: 301 --GHIERTYVWPYQLHASIGPSCAVADWRPEGLTVWSGTQNPHVMRIDLSRLCDLDEGSI 358 GHIERTYVWPYQLHASIGPSCAVADWRPEGLTVWSGTQNPHVMRIDLSRLCDLDEGSI Sbjct: 335 AAGHIERTYVWPYQLHASIGPSCAVADWRPEGLTVWSGTQNPHVMRIDLSRLCDLDEGSI 394 Query: 359 EVIRLEASGCYGRNCADDVVADAALLSRAVGRPVRVQLTREQEHAWEPKGAAQLMDVCGG 418 EVIRLEASGCYGRNCADDVVADAALLSRAVGRPVRVQLTREQEHAWEPKGAAQLMDVCGG Sbjct: 395 EVIRLEASGCYGRNCADDVVADAALLSRAVGRPVRVQLTREQEHAWEPKGAAQLMDVCGG 454 Query: 419 VDAQGRLSHYRFQTRYPSNDAPVLALLLTGKIAPEPRVLEMGDRTAVPPYAYPHMQIDCD 478 VDAQGRLSHYRFQTRYPSNDAPVLALLLTGKIAPEPRVLEMGDRTAVPPYAYPHMQIDCD Sbjct: 455 VDAQGRLSHYRFQTRYPSNDAPVLALLLTGKIAPEPRVLEMGDRTAVPPYAYPHMQIDCD 514 Query: 479 DVAPIVRAGWLRGVSAMPNSFAHEVFIDELAELAGADRLAFRLAHLPDQRASELLQAVAH 538 DVAPIVRAGWLRGVSAMPNSFAHEVFIDELAELAGADRLAFRLAHLPDQRASELLQAVAH Sbjct: 515 DVAPIVRAGWLRGVSAMPNSFAHEVFIDELAELAGADRLAFRLAHLPDQRASELLQAVAH 574 Query: 539 KAGWVAHAQGSRGQVQADGKLRGRGIAYARYVHSKFPGFGAAWSAWVIDVEVDPVTGALA 598 KAGWVAHAQGSRGQVQADGKLRGRGIAYARYVHSKFPGFGAAWSAWVIDVEVDPVTGALA Sbjct: 575 KAGWVAHAQGSRGQVQADGKLRGRGIAYARYVHSKFPGFGAAWSAWVIDVEVDPVTGALA 634 Query: 599 VTSLVVGQDTGMMVNPAGVRHQMHGNILQSLSRVLKERVAFGPHGASSLEWGAYPILHFT 658 VTSLVVGQDTGMMVNPAGVRHQMHGNILQSLSRVLKERVAFGPHGASSLEWGAYPILHFT Sbjct: 635 VTSLVVGQDTGMMVNPAGVRHQMHGNILQSLSRVLKERVAFGPHGASSLEWGAYPILHFT 694 Query: 659 EVPPIEIVLMERQDQPPMGAGESASVPSAAALSNALFDATGRRLRQPPFNAECILAALQE 718 EVPPIEIVLMERQDQPPMGAGESASVPSAAALSNALFDATGRRLRQPPFNAECILAALQE Sbjct: 695 EVPPIEIVLMERQDQPPMGAGESASVPSAAALSNALFDATGRRLRQPPFNAECILAALQE 754 Query: 719 PLATG 723 PLA G Sbjct: 755 PLAAG 759 >gi|300310653|ref|YP_003774745.1| cytochrome protein [Herbaspirillum seropedicae SmR1] Length = 974 Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 167/561 (29%), Positives = 243/561 (43%), Gaps = 48/561 (8%) Query: 173 VDIPAKVRAQPVYVHDVRVPGMLHGRVVRPPHPGRDGGDFVGRSLLAVDRQSVAHLPGLV 232 VD+ A A P + +R H R+ PP G + G L VD + LPG+ Sbjct: 5 VDLRATATATPASLASLR-----HARLALPPVLGWQSQRYTGARLQGVDVDAALGLPGVH 59 Query: 233 AVVVEGDFIGVVAEREEQAQRAMRELKVQWKSIPPLPPMDDLEARLRSLPARRRELVRQG 292 +V + + V+A+ + QA++A LK +W + P DD A LR P + L ++G Sbjct: 60 RLVQQRHLLAVIADSDAQARQACALLKPRWST-----PADDDRA-LR--PRQAHSLYQRG 111 Query: 293 DPDAASAAGHIERTYVWPYQLHASIGPSCAVADWRPEG--LTVWSGTQNPHVMRIDLSRL 350 + +E Y W A++ VA P G + + NP + ++++ L Sbjct: 112 KEEEGLYDLTLEADYQW-QDGEATLSSPDVVALAAPSGTGMRIDLPFGNPAAIALEVAGL 170 Query: 351 CDLDEGSIEVIRLEA-SGCYGRNCADDVVADAALLSRAVGRPVRVQLTREQEHAWEPKGA 409 L IEV A + A DV AALL + G V + LT E Sbjct: 171 LALPVAQIEVRSHRAPADAREYRAASDVAGVAALLCQQCGEAVSLALTPA-----EAPAL 225 Query: 410 AQLMDVCGGVDAQGRLSHYRFQTRYPSNDAPVLALLLTGKIAPEPRVLEMGDRTAVPPYA 469 + + + G D G L + S AP LA LLT + PPY Sbjct: 226 STSLHLRGEFDEDGALGNTTLDITQDS-PAPPLAWLLTETAYALQDAAAIDGAALAPPYD 284 Query: 470 YPHMQIDCDDVAPIVRAGWLRGVSAMPNSFAHEVFIDELAELAGADRLAFRLAHLPDQRA 529 + + V A V FA EVF+DE+A+ G D + +RLAHLPD Sbjct: 285 WRSVH---------VSAALEASVPVAATCFAQEVFLDEVAQRLGQDPVQYRLAHLPDSHG 335 Query: 530 SELLQAVAHKAGWVAHAQGSRGQVQADGKLRGRGIAYARYVHSKFPGFGAAWSAWVIDVE 589 +L+++VAH A W + + G+LRGRG AYA + +WSAWV +VE Sbjct: 336 RDLIRSVAHGARW---HPARQQGQRQGGRLRGRGFAYASTIEQHAGQPVQSWSAWVAEVE 392 Query: 590 VDPVTGALAVTSLVVGQDT---GMMVNPAGVRHQMHGNILQSLSRVLKERVAFGPHG--A 644 D +G L+VT + G D G + V Q + L +R+ + G G A Sbjct: 393 YDEASGELSVTKVTAGHDVRAAGQAPATSPVLAQANAERLDQQARLALAQSMHGGQGFDA 452 Query: 645 SSLEWGAYPIL-------HFTEVPPIEIVLMERQDQP-PMGAGESASVPSAAALSNALFD 696 S E G L T +P +E+V Q + AG + ++P+AAA+SNA++ Sbjct: 453 WSSEAGLPSTLPSSLGLPQRTALPTVELVGTPAALQNIQLNAGAAFTLPAAAAISNAVYA 512 Query: 697 ATGRRLRQPPFNAECILAALQ 717 ATG RLRQ PF+ E I AL Sbjct: 513 ATGVRLRQAPFSGEQIRLALN 533 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,429,742 Number of extensions: 107073 Number of successful extensions: 337 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 333 Number of HSP's successfully gapped: 2 Length of query: 723 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 631 Effective length of database: 1,184,250 Effective search space: 747261750 Effective search space used: 747261750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)