BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0201.p (537 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310662|ref|YP_003774754.1| aerotaxis sensor receptor trans... 944 0.0 gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor trans... 306 2e-84 gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis pro... 259 4e-70 gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor trans... 253 4e-68 gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor trans... 251 2e-67 >gi|300310662|ref|YP_003774754.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 944 bits (2441), Expect = 0.0, Method: Compositional matrix adjust. Identities = 534/537 (99%), Positives = 534/537 (99%), Gaps = 1/537 (0%) Query: 1 MLSLPATQDPRLPVLGHGNEDVHQADMALGEDEYLITRTDIEGRMVYVNAAFVRRSGYAA 60 MLSLPATQDPRLPVLGHGNEDV QADMALGEDEYLITRTDIEGRMVYVNAAFVRRSGYAA Sbjct: 1 MLSLPATQDPRLPVLGHGNEDV-QADMALGEDEYLITRTDIEGRMVYVNAAFVRRSGYAA 59 Query: 61 DELLGQPASMMYAPDTPPELGVDLWRTVKARGAWTGVMRHRGKDGRCFWARATITRTMVD 120 DELLGQPASMMYAPDTPPELG DLWRTVKARGAWTGVMRHRGKDGRCFWARATITRTMVD Sbjct: 60 DELLGQPASMMYAPDTPPELGADLWRTVKARGAWTGVMRHRGKDGRCFWARATITRTMVD 119 Query: 121 GAHVGHTTVRTRAADHEVRRMRAFTAARRRGAGRWWELREGRLGLRGIGRLLRISLSPTL 180 GAHVGHTTVRTRAADHEVRRMRAFTAARRRGAGRWWELREGRLGLRGIGRLLRISLSPTL Sbjct: 120 GAHVGHTTVRTRAADHEVRRMRAFTAARRRGAGRWWELREGRLGLRGIGRLLRISLSPTL 179 Query: 181 AWRMRFAQGLNTALLLVALLWLTGSGGAAGWQGVVIVLLALWQVLVLALAARRVSRPVEG 240 AWRMRFAQGLN ALLLVALLWLTGSGGAAGWQGVVIVLLALWQVLVLALAARRVSRPVEG Sbjct: 180 AWRMRFAQGLNAALLLVALLWLTGSGGAAGWQGVVIVLLALWQVLVLALAARRVSRPVEG 239 Query: 241 MLRHARSIGAGDLTQVVAQQGGRDDEVARLAMSMDVMQKSLASLVRDLREGVATVGGAAA 300 MLRHARSIGAGDLTQVVAQQGGRDDEVARLAMSMDVMQKSLASLVRDLREGVATVGGAAA Sbjct: 240 MLRHARSIGAGDLTQVVAQQGGRDDEVARLAMSMDVMQKSLASLVRDLREGVATVGGAAA 299 Query: 301 EISDANMDLAARTEETAAAVEQSAHRMAELDSAVQRNAVSAGQAHGLATASVQAAEAGSE 360 EISDANMDLAARTEETAAAVEQSAHRMAELDSAVQRNAVSAGQAHGLATASVQAAEAGSE Sbjct: 300 EISDANMDLAARTEETAAAVEQSAHRMAELDSAVQRNAVSAGQAHGLATASVQAAEAGSE 359 Query: 361 LVRQVIGSMDEISRSASGIAEISSVIEGIAFQTNILALNAAVEAARAGAHGRGFAVVASE 420 LVRQVIGSMDEISRSASGIAEISSVIEGIAFQTNILALNAAVEAARAGAHGRGFAVVASE Sbjct: 360 LVRQVIGSMDEISRSASGIAEISSVIEGIAFQTNILALNAAVEAARAGAHGRGFAVVASE 419 Query: 421 VRSLAQRSSDAVRQISQLLARSGSDVANGVNLAGQAGESLEQIVGLARKVGVTVGEISEA 480 VRSLAQRSSDAVRQISQLLARSGSDVANGVNLAGQAGESLEQIVGLARKVGVTVGEISEA Sbjct: 420 VRSLAQRSSDAVRQISQLLARSGSDVANGVNLAGQAGESLEQIVGLARKVGVTVGEISEA 479 Query: 481 SRQQGGEITHINQVIGQIDDAVRQNAAMVEQAAAAAAALAEQSRRLEQSVAMFRTRQ 537 SRQQGGEITHINQVIGQIDDAVRQNAAMVEQAAAAAAALAEQSRRLEQSVAMFRTRQ Sbjct: 480 SRQQGGEITHINQVIGQIDDAVRQNAAMVEQAAAAAAALAEQSRRLEQSVAMFRTRQ 536 >gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 306 bits (784), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 195/508 (38%), Positives = 295/508 (58%), Gaps = 19/508 (3%) Query: 35 LITRTDIEGRMVYVNAAFVRRSGYAADELLGQPASMMYAPDTPPELGVDLWRTVKARGAW 94 ++++TD++G + YVN F+ SG+ +ELLG P +++ PD P E D+W T+K W Sbjct: 20 IVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPDMPAEAFADMWATIKGGTPW 79 Query: 95 TGVMRHRGKDGRCFWARATITRTMVDGAHVGHTTVRTRAADHEVRRMRAFTAARRRGAGR 154 TG++++R K+G +W RA +T +G VG+ +VRT+ V A+ RRG + Sbjct: 80 TGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPERDAVAGAEKLYASIRRGQAK 139 Query: 155 WWELREG---RLGLRG-IGRLLRISLSPTLAWRMRFAQGLNTALLLVALL----WLTGSG 206 L G R GL G +G+L R+ L+ L M + A+++ + W + Sbjct: 140 GIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLAIQLAVVVAGMAALHQWWISAL 199 Query: 207 GAAGWQGVVIVLLALWQVLVLALAARRVSRPVEGMLRHARSIGAGDLTQVVAQQGGRDDE 266 AA ++ +AL L+ +P+ L +I GDL+ V + R DE Sbjct: 200 AAAAALLSIVQWIALRNALI---------KPLHQALDITHAITGGDLS--VRIETTRHDE 248 Query: 267 VARLAMSMDVMQKSLASLVRDLREGVATVGGAAAEISDANMDLAARTEETAAAVEQSAHR 326 + RL S+ M +L +++ D+R V T+ A EI+ N+DL+ RTE AA +E++A Sbjct: 249 LGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAANLEETASS 308 Query: 327 MAELDSAVQRNAVSAGQAHGLATASVQAAEAGSELVRQVIGSMDEISRSASGIAEISSVI 386 M EL S V++NA A QA+ LA + A G + V +M+EIS S+ I +I S+I Sbjct: 309 MHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHKIVDIISLI 368 Query: 387 EGIAFQTNILALNAAVEAARAGAHGRGFAVVASEVRSLAQRSSDAVRQISQLLARSGSDV 446 + IAFQTNILALNAAVEAARAG GRGFAVVASEVRSLAQRS+ A ++I +L+ S V Sbjct: 369 DSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDASVEKV 428 Query: 447 ANGVNLAGQAGESLEQIVGLARKVGVTVGEISEASRQQGGEITHINQVIGQIDDAVRQNA 506 G QA ++ IV ++V +GEI EA++QQ I +++ I Q+D + +QNA Sbjct: 429 DIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDASTQQNA 488 Query: 507 AMVEQAAAAAAALAEQSRRLEQSVAMFR 534 ++VE+AAAAA +L EQ+ RL Q++++F+ Sbjct: 489 SLVEEAAAAAGSLQEQTVRLLQAISVFK 516 >gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 544 Score = 259 bits (662), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 153/323 (47%), Positives = 220/323 (68%), Gaps = 6/323 (1%) Query: 215 VIVLLALWQVLVLALAARRVSRPVEGMLRHARSIGAGDLTQVVAQQGGRDDEVARLAMSM 274 VI ++ L +L+ AR+++R + + A +I GDLT+ + DE+ L +M Sbjct: 196 VIAVVTLMGLLI----ARKIARSLAEAVELAETIAEGDLTREI--DTSSTDEIGHLMAAM 249 Query: 275 DVMQKSLASLVRDLREGVATVGGAAAEISDANMDLAARTEETAAAVEQSAHRMAELDSAV 334 M ++L ++V +R GV TV A+++I+ NMDL+ARTE+ A+++EQ+A EL S V Sbjct: 250 AKMNRNLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQTAAATEELTSTV 309 Query: 335 QRNAVSAGQAHGLATASVQAAEAGSELVRQVIGSMDEISRSASGIAEISSVIEGIAFQTN 394 ++NA +A QA LA+A+ A G E+V+QV+ +M+EI S+ IA+I SVI+GIAFQTN Sbjct: 310 KQNAENALQADQLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADIISVIDGIAFQTN 369 Query: 395 ILALNAAVEAARAGAHGRGFAVVASEVRSLAQRSSDAVRQISQLLARSGSDVANGVNLAG 454 ILALNAAVEAARAG GRGFAVVA+EVRSLAQRS+ A ++I QL+ S S V NG L Sbjct: 370 ILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKQLIDDSVSKVENGSQLVM 429 Query: 455 QAGESLEQIVGLARKVGVTVGEISEASRQQGGEITHINQVIGQIDDAVRQNAAMVEQAAA 514 AG +++Q+V R+V V EIS ASR+Q I +NQ I +D + ++NAA+VE+A A Sbjct: 430 SAGNTMQQVVESVRRVTDVVTEISAASREQSLGIEQVNQAISHMDQSTQENAALVEEATA 489 Query: 515 AAAALAEQSRRLEQSVAMFRTRQ 537 AA +L EQ+R+LE++V +F+ RQ Sbjct: 490 AAQSLQEQARQLERAVNVFKLRQ 512 >gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 253 bits (645), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 185/538 (34%), Positives = 309/538 (57%), Gaps = 42/538 (7%) Query: 19 NEDVHQADMALGEDEYLITRTDIEGRMVYVNAAFVRRSGYAADELLGQPASMMYAPDTPP 78 N + + L + + ++++TD++G ++YVN F+ SG+ +EL+G P +++ P+ P Sbjct: 4 NLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPEMPR 63 Query: 79 ELGVDLWRTVKARGAWTGVMRHRGKDGRCFWARATITRTMVDGAHVGHTTVRTRAADHEV 138 E D+W T+K W G++++R K+G +W +A +T +G VG+ +VRTR + +V Sbjct: 64 EAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSREQV 123 Query: 139 RR----MRAFTAARRRGAGRWWELREG---RLGLRGIGRLLR-ISLSPTLAWRMRFAQGL 190 + R F+A + RG + G R GL G + LR + ++ L W M G+ Sbjct: 124 QAAEAAYRKFSAGQARG----LRVHRGAVVRTGLTGWLQGLRELPVARRLGWTM----GV 175 Query: 191 NTALLL----VALLWLTGSGGA--AGWQGVV---IVLLALWQVLVLALAARRVSRPVEGM 241 T + + VA + +GG+ A W G ++LLA W +L ++ A P++ Sbjct: 176 LTLMFILGGAVAGNAVMSAGGSPFAVWLGTAAGALMLLASWAMLHASIVA-----PLQRA 230 Query: 242 LRHARSIGAGDLTQVVAQQGGRDDEVARLAMSMDVMQK-----SLASLVRDLREGVATVG 296 ++ + GDL + D AR M + + +L +++ D+R V ++ Sbjct: 231 IKAVHGLAGGDLDSHI-------DTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMT 283 Query: 297 GAAAEISDANMDLAARTEETAAAVEQSAHRMAELDSAVQRNAVSAGQAHGLATASVQAAE 356 + EI++ NMDL+ RTE A+A+E++A + E + V++NA SA A A ++ A+ Sbjct: 284 ISTGEIANGNMDLSGRTEAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQ 343 Query: 357 AGSELVRQVIGSMDEISRSASGIAEISSVIEGIAFQTNILALNAAVEAARAGAHGRGFAV 416 G V+++ +M+EI ++ I +I +I+GI+FQTNILALNAAVEAARAG GRGFAV Sbjct: 344 RGGSSVQRMGRTMEEIDAASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAV 403 Query: 417 VASEVRSLAQRSSDAVRQISQLLARSGSDVANGVNLAGQAGESLEQIVGLARKVGVTVGE 476 VA+EVR+LAQRS+ A + I L+ S + V +G L + +++ ++ G + VT+ E Sbjct: 404 VAAEVRTLAQRSAAAAKDIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAE 463 Query: 477 ISEASRQQGGEITHINQVIGQIDDAVRQNAAMVEQAAAAAAALAEQSRRLEQSVAMFR 534 I+ AS +Q G I +NQ + ID+ +QNAA+VEQAAAAA L +Q+ +L Q+V++F+ Sbjct: 464 ITVASNEQSGGIEQLNQAVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFK 521 >gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 493 Score = 251 bits (640), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 189/507 (37%), Positives = 288/507 (56%), Gaps = 26/507 (5%) Query: 36 ITRTDIEGRMVYVNAAFVRRSGYAADELLGQPASMMYAPDTPPELGVDLWRTVKARGAWT 95 ++ TD + Y N++FV SG+ ++L+GQP +++ PD P E D+W T++ AWT Sbjct: 1 MSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRGDAWT 60 Query: 96 GVMRHRGKDGRCFWARATITRTMVDGAHVGHTTVRTRAADHEVRRMRAFTAARRRGAGRW 155 V+++R DGR +W RA +T G G +VRT+ A HE+R A R G R Sbjct: 61 AVVKNRRADGRHYWVRANVTPIRRGGGITGFLSVRTQPAPHEIRAAAALYRRFREGRARG 120 Query: 156 WELREG---RLGLRGIGRLLRISLSPTLAWRMRFA--QGLNTALLLVALLWLTGSGGAAG 210 G R GL G RL ++ + WR+R A G TAL +GG Sbjct: 121 LRFCHGLVVRSGLLGWTRLEQVL---PVRWRLRLALAAGGLTAL----------AGGILA 167 Query: 211 WQGVVIVLLALWQVLVLALAA----RRVSRPVEGMLRHARSIGAGDLTQVVAQQGGRDDE 266 G + +A + LALA RR++ P+E +L+ A+++ G Q Q R DE Sbjct: 168 --GAPLAPMAASVLPPLALACLWLERRLAAPLELVLQQAKAVACGQPAQT--QGLDRIDE 223 Query: 267 VARLAMSMDVMQKSLASLVRDLREGVATVGGAAAEISDANMDLAARTEETAAAVEQSAHR 326 + L +++ +L +L+ D+ V + A+ +I+ N DL RT +T A ++Q+A Sbjct: 224 IGLLLRAVNQSGLNLRALIDDVAAQVQGLEQASRQIASDNADLRQRTADTHAQLQQTASA 283 Query: 327 MAELDSAVQRNAVSAGQAHGLATASVQAAEAGSELVRQVIGSMDEISRSASGIAEISSVI 386 ++ +AV+ +A SA AH A + QAA G ++V QV+ +M +I+ ++ I EI+ +I Sbjct: 284 AEQMATAVRHSADSAQAAHAQARQTSQAAAQGRDIVTQVVQTMHQIADASGRIGEINGLI 343 Query: 387 EGIAFQTNILALNAAVEAARAGAHGRGFAVVASEVRSLAQRSSDAVRQISQLLARSGSDV 446 + IAFQTNILALNAAVEAARAG GRGFAVVA+EVR+LAQRS+ A R+I L+A S Sbjct: 344 DSIAFQTNILALNAAVEAARAGEAGRGFAVVAAEVRTLAQRSASAAREIKALIAHSVGQS 403 Query: 447 ANGVNLAGQAGESLEQIVGLARKVGVTVGEISEASRQQGGEITHINQVIGQIDDAVRQNA 506 G A QA ++E IV A+ + +G IS ++ +Q ++ ++Q +D +QNA Sbjct: 404 QAGAQRAEQAAAAIESIVAQAQDMSTLIGAISTSAVEQSQGVSQVSQSALMLDGMTQQNA 463 Query: 507 AMVEQAAAAAAALAEQSRRLEQSVAMF 533 AMVE +AAA AA+ ++ + L+Q+VA+F Sbjct: 464 AMVEHSAAAVAAMQQRMQTLQQAVAVF 490 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.130 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,225,041 Number of extensions: 42838 Number of successful extensions: 593 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 352 Number of HSP's successfully gapped: 71 Length of query: 537 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 447 Effective length of database: 1,193,720 Effective search space: 533592840 Effective search space used: 533592840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)