BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0194.p (213 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310669|ref|YP_003774761.1| two component response regulato... 440 e-125 gi|300310176|ref|YP_003774268.1| C4-dicarboxylate transport tran... 152 2e-38 gi|300313791|ref|YP_003777883.1| response regulator protein [Her... 146 1e-36 gi|300313031|ref|YP_003777123.1| two component response regulato... 76 2e-15 gi|300312654|ref|YP_003776746.1| C4-dicarboxylate transport resp... 73 2e-14 >gi|300310669|ref|YP_003774761.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 214 Score = 440 bits (1132), Expect = e-125, Method: Compositional matrix adjust. Identities = 213/213 (100%), Positives = 213/213 (100%) Query: 1 METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMP 60 METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMP Sbjct: 2 METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMP 61 Query: 61 EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120 EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT Sbjct: 62 EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 121 Query: 121 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA 180 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA Sbjct: 122 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA 181 Query: 181 SVKDKLGCQSTATLVRDVLMDFGSDFLRLPKAA 213 SVKDKLGCQSTATLVRDVLMDFGSDFLRLPKAA Sbjct: 182 SVKDKLGCQSTATLVRDVLMDFGSDFLRLPKAA 214 >gi|300310176|ref|YP_003774268.1| C4-dicarboxylate transport transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 196 Score = 152 bits (384), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 121/197 (61%), Gaps = 11/197 (5%) Query: 7 VVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDAN-----SLSCLILDVRMPE 61 +++IVDD+E +R SLAWL S NI ++ L A A+ CL+LDVRMP Sbjct: 1 MLHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPG 60 Query: 62 ISGFQLQDRLKEIG--ADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQM 119 SG L + LK G PVIF++GHGD+PM+V L NGA DF EKP+N Q+++R+ Sbjct: 61 TSGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLE 120 Query: 120 TLKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHR 179 L + +A +++RL L+ RERE+L+ ++ G+ +K+IA EL IS++TV+VHR Sbjct: 121 AL----ASSRAGGAEDAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHR 176 Query: 180 ASVKDKLGCQSTATLVR 196 A + DK+ ++ L R Sbjct: 177 AHIFDKMNVKTAVELAR 193 >gi|300313791|ref|YP_003777883.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 146 bits (368), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 81/189 (42%), Positives = 115/189 (60%) Query: 8 VYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMPEISGFQL 67 V++VDDD VRT+L LL+S F + FL+A CL+LD++MP GF++ Sbjct: 5 VFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSDGFEV 64 Query: 68 QDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMTLKHVAGN 127 RL+ G IPVIF+SG+G IP +V+A+ GA +FL KP +++L ++ L+ Sbjct: 65 VRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQIAERQ 124 Query: 128 MQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRASVKDKLG 187 +Q+RT +RL+TLT RERE+LE I G +K IA EL IS TV VH+ V DK+ Sbjct: 125 LQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVMDKMQ 184 Query: 188 CQSTATLVR 196 ++ A LVR Sbjct: 185 TKTLADLVR 193 >gi|300313031|ref|YP_003777123.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 195 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 9/195 (4%) Query: 3 TNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMPEI 62 TN + +IV D+++ L LL + FL+ A L+L V M + Sbjct: 2 TNAHLAHIVGGDDSLGGPLGRLLEEAGFHVAHHRSADQFLEHATATGPGGLVLAVNMRNM 61 Query: 63 SGFQLQDRLKEIGADIPVIFVSGH--GDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120 QL+ L E IP+I ++G+ G P+ G ++P +QQ++ + Sbjct: 62 DAPQLRSLLDEKKEGIPLIVITGNQPGAAPL-------GQSSAQQEPEVAQQLVAAFREA 114 Query: 121 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA 180 L + + +R+ +ARL TLT RERE+L ++ G+ +K IA EL S +TV HR Sbjct: 115 LMPYDESAPHQQQRRIHQARLATLTRREREVLMLLVKGRLNKQIAAELGTSERTVKAHRQ 174 Query: 181 SVKDKLGCQSTATLV 195 V K+ S A LV Sbjct: 175 QVMRKMYAGSLAELV 189 >gi|300312654|ref|YP_003776746.1| C4-dicarboxylate transport response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 445 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 59/106 (55%) Query: 10 IVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMPEISGFQLQD 69 +++D++ VR + A L E L + ++ DVR+P +SG + Sbjct: 12 LIEDEQTVRRATAQALELGGFAVTACGSAEEALPLITRDFAGVVVSDVRLPGLSGLDVLA 71 Query: 70 RLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLE 115 R+ I D+PVI V+GHGD+ M+V A+ GA DF+EKP++S +LE Sbjct: 72 RVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLE 117 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 581,200 Number of extensions: 20744 Number of successful extensions: 184 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 191 Number of HSP's successfully gapped: 25 Length of query: 213 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 132 Effective length of database: 1,236,335 Effective search space: 163196220 Effective search space used: 163196220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)