BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0193.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310670|ref|YP_003774762.1| 4-hydroxyphenylacetate 3-monoox...   394   e-111
gi|300310811|ref|YP_003774903.1| 4-hydroxyphenylacetate 3-monoox...   150   8e-38

>gi|300310670|ref|YP_003774762.1| 4-hydroxyphenylacetate
           3-monooxygenase small subunit [Herbaspirillum
           seropedicae SmR1]
          Length = 190

 Score =  394 bits (1013), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MSANAVQTATVHPSTSAASAARPALAPEQLEFRHAMAHLPAAVSIITTNGEGGRCGITAS 60
           MSANAVQTATVHPSTSAASAARPALAPEQLEFRHAMAHLPAAVSIITTNGEGGRCGITAS
Sbjct: 1   MSANAVQTATVHPSTSAASAARPALAPEQLEFRHAMAHLPAAVSIITTNGEGGRCGITAS 60

Query: 61  AVCSVTDTPPTILVCINRSSAMHEVFRKNGRLCVNVLSDELEQLAMHFSGATKVPMEERF 120
           AVCSVTDTPPTILVCINRSSAMHEVFRKNGRLCVNVLSDELEQLAMHFSGATKVPMEERF
Sbjct: 61  AVCSVTDTPPTILVCINRSSAMHEVFRKNGRLCVNVLSDELEQLAMHFSGATKVPMEERF 120

Query: 121 AWDIWEQPGELDQPVLADALVKLQGRIREFKEVGTHSVMFVELAEVKVNEKKDSLIYFNR 180
           AWDIWEQPGELDQPVLADALVKLQGRIREFKEVGTHSVMFVELAEVKVNEKKDSLIYFNR
Sbjct: 121 AWDIWEQPGELDQPVLADALVKLQGRIREFKEVGTHSVMFVELAEVKVNEKKDSLIYFNR 180

Query: 181 LFHKVKRTAL 190
           LFHKVKRTAL
Sbjct: 181 LFHKVKRTAL 190


>gi|300310811|ref|YP_003774903.1| 4-hydroxyphenylacetate
           3-monooxygenase small subunit [Herbaspirillum
           seropedicae SmR1]
          Length = 166

 Score =  150 bits (378), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 102/156 (65%), Gaps = 2/156 (1%)

Query: 31  EFRHAMAHLPAAVSIITTNGEGGRCGITASAVCSVTDTPPTILVCINRSSAMHEVFRKNG 90
           +FR AMA L AAV+IITT+G  GR  +T SAV SV+D P T+LVCIN SSA H +   NG
Sbjct: 4   DFRDAMARLSAAVNIITTDGPAGRAAMTVSAVSSVSDEPATVLVCINVSSAAHPILVGNG 63

Query: 91  RLCVNVLSDELEQLAMHFSGATKVPMEERFAWDIWEQPGELDQPVLADALVKLQGRIREF 150
           RLC+N+L+   E +A   +G T +  EER A   WE  G+  QPVL DAL  L+G I   
Sbjct: 64  RLCINILAAHHEDVARIIAGMTGLAAEERMAQVRWEM-GDYGQPVLPDALAVLEGDIVLQ 122

Query: 151 KEVGTHSVMFVELAEVKV-NEKKDSLIYFNRLFHKV 185
           ++ GTHSV+FVE+  +++   + D L YF R FH++
Sbjct: 123 QQTGTHSVLFVEIRHIRLAAAQADGLAYFGRRFHRI 158


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 497,160
Number of extensions: 18262
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)