BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0187.p (309 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310675|ref|YP_003774767.1| LysR family transcription regul... 628 0.0 gi|300310812|ref|YP_003774904.1| LysR family transcription regul... 219 3e-58 gi|300310448|ref|YP_003774540.1| transcription regulator protein... 215 4e-57 gi|300313281|ref|YP_003777373.1| LysR family transcription regul... 191 5e-50 gi|300314079|ref|YP_003778171.1| LysR family transcription regul... 147 1e-36 >gi|300310675|ref|YP_003774767.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 628 bits (1620), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/309 (99%), Positives = 308/309 (99%) Query: 1 MATFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFEDPLFIRTKEG 60 MATFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIF+DPLFIRTKEG Sbjct: 1 MATFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEG 60 Query: 61 MQPTPAALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEIL 120 MQPTPAALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEIL Sbjct: 61 MQPTPAALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEIL 120 Query: 121 TAQAPDVRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKPVTCHELLFRETYVCLMRQRD 180 TAQAPDVRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKPVTCHELLFRETYVCLMRQRD Sbjct: 121 TAQAPDVRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKPVTCHELLFRETYVCLMRQRD 180 Query: 181 GLPQRAQLGLDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPRILGK 240 GLPQRAQL LDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPRILGK Sbjct: 181 GLPQRAQLELDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPRILGK 240 Query: 241 SDLVATVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQIVID 300 SDLVATVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQIVID Sbjct: 241 SDLVATVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQIVID 300 Query: 301 LLQQYGRSS 309 LLQQYGRSS Sbjct: 301 LLQQYGRSS 309 >gi|300310812|ref|YP_003774904.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 219 bits (557), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 121/302 (40%), Positives = 181/302 (59%), Gaps = 6/302 (1%) Query: 8 DLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFEDPLFIRTKEGMQPTPAA 67 DLNLL+ F I + RSLT A RLHL+QPAVS+AL RLR++F+DPLF+R+ M PT A Sbjct: 10 DLNLLKTFIVIWELRSLTAAAERLHLTQPAVSHALRRLREMFDDPLFVRSTSAMVPTETA 69 Query: 68 LELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTAQAPDV 127 + L +PI RAL +Q+AL +FDPA +TR F M+D++ LP L E L AP V Sbjct: 70 IRLHEPIARALDILQEALHTHAQFDPATATRTFHLVMSDMSCSHVLPLLMEELAHAAPHV 129 Query: 128 RLQVEQVPPAHLEEALRTGQLDFAFGNLPALKPVTCHELLFRETYVCLMRQRDGLPQRAQ 187 ++V+Q+ +L A+R G +D AFG LP L +L+ + Y+C++R+ L Q Sbjct: 130 SIEVQQMAMENLGAAMRNGDVDLAFGYLPGLPEDCQSQLVLYDDYICMLRREHPLAQ-GP 188 Query: 188 LGLDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPRILGKSDLVATV 247 L L+ L + +V + + H E+ + GV+R ++L +PHFTV P+I+ +DL + Sbjct: 189 LTLENLLQLRYVYTVTNTTGHQLAEDVLRNAGVKRDVALRMPHFTVAPQIVRITDLALFL 248 Query: 248 PARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQIVIDLLQQYGR 307 P IA + +H FV LP+ +P + V+++ H F D G WLR ++I++ +GR Sbjct: 249 PRSIAERNNLDH--AFVLLDLPLEMPRIPVSIYTHTRFSGDTGIQWLRSLLIEM---FGR 303 Query: 308 SS 309 S Sbjct: 304 GS 305 >gi|300310448|ref|YP_003774540.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 215 bits (547), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 115/295 (38%), Positives = 166/295 (56%), Gaps = 4/295 (1%) Query: 6 NMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFEDPLFIRTKEGMQPTP 65 ++DLNLL VFQ + ER ++ RL LSQPAVS AL RLR+ FED LF+RT +GMQPTP Sbjct: 8 DIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTAQGMQPTP 67 Query: 66 AALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTAQAP 125 A +LA+P+ ALQ V AL E F P S R F +MTDV E+ F+P L E AP Sbjct: 68 FAEQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIEACARCAP 127 Query: 126 DVRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKPVTCHELLFRETYVCLMRQRDGL--P 183 V + + L+ + +G++D A G L LFR+ YV + R L P Sbjct: 128 GVSISTVRAGAIDLKSEMESGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRIGHALDKP 187 Query: 184 QRAQLGLDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPRILGKSDL 243 R ++ L EFLA H++V S ES + ++ + +K G+ + +PHFT +P I+ + L Sbjct: 188 GRGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPYIVSSTAL 247 Query: 244 VATVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQIV 298 V TVP ++A + P + P+ +P ++ + WH+ ++ D GN WLR + Sbjct: 248 VVTVPRKLAE--SAAAPFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVWLRGFI 300 >gi|300313281|ref|YP_003777373.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 323 Score = 191 bits (486), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 106/298 (35%), Positives = 168/298 (56%), Gaps = 4/298 (1%) Query: 6 NMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFEDPLFIRTKEGMQPTP 65 N DLNLL + A+ +ERS++ A +L +SQPAVS AL +LR DPLF++T GMQPTP Sbjct: 3 NFDLNLLPIALAVFEERSVSAAARKLDMSQPAVSVALNKLRSALGDPLFVKTGRGMQPTP 62 Query: 66 AALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTAQAP 125 A+ L P LQ V + +++F PA +T+ F +++D+ E+M LP L E + +AP Sbjct: 63 RAVSLIGPTREILQRVHAEVLSSDQFTPATTTKRFVLALSDIGELMLLPRLLERIRDEAP 122 Query: 126 DVRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKPVT-CHELLFRETYVCLMRQRDGLPQ 184 + + PA L AL +G++D A G P L+ + LF + +VCL+R LP Sbjct: 123 HASVVTVTMAPAELVAALESGEVDLAIGYFPDLRNRNFFQQRLFSQDFVCLLRAGHPLPA 182 Query: 185 RAQLGLDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPRILGKSDLV 244 + ++ L+ + A H++V++ E + ++RR+ LS HF +P ++ SDLV Sbjct: 183 Q-KISLEHYQAAGHIVVKAEGRDQPMCERFLLRRKIRRRVVLSTAHFMAIPLLVATSDLV 241 Query: 245 ATVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQIVIDLL 302 ATVP F G+ + + +P++++ HWH+ + DAGN+WLR + L Sbjct: 242 ATVPRAFGE-FVVRFAGIRL-VEPGFEMPMLDLKQHWHRKYHKDAGNAWLRGLAAALF 297 >gi|300314079|ref|YP_003778171.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 147 bits (370), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 149/304 (49%), Gaps = 15/304 (4%) Query: 3 TFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFEDPLFIRTKEGMQ 62 +F +DLNLLRVF A+ E++LT A N L ++QPAVS AL RLR D L IRT G++ Sbjct: 2 SFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGVK 61 Query: 63 PTPAALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTA 122 PTP A EL + RAL ++ A+ E FD +++ FR +M D ++LP L + Sbjct: 62 PTPRAEELWPTVRRALSELE-AVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMR 120 Query: 123 QAPDVRLQVEQVPPAHLEEALRTGQLDFAFGNLPAL-----------KPVTCHELLFRET 171 AP +++++ + L G +D A G P + K H L+ Sbjct: 121 DAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQ 180 Query: 172 YVCLMRQRDGLPQRAQLGLDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHF 231 YVC+M + L + L LD + H+LV + H +++ + +R+I L++ F Sbjct: 181 YVCVMHKSHPLAGQP-LTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQF 239 Query: 232 TVLPRILGKSDLVATVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGN 291 RI+ S+L+ +P + + + V +LP P V + WH+ + + Sbjct: 240 FTAGRIVASSELITVLPRHL--VAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAH 297 Query: 292 SWLR 295 WLR Sbjct: 298 KWLR 301 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 953,177 Number of extensions: 39342 Number of successful extensions: 246 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 241 Number of HSP's successfully gapped: 18 Length of query: 309 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 224 Effective length of database: 1,217,395 Effective search space: 272696480 Effective search space used: 272696480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)