BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0177.p
         (353 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310685|ref|YP_003774777.1| 2-ketopantoate reductase [Herba...   703   0.0  
gi|300310480|ref|YP_003774572.1| 2-dehydropantoate 2-reductase [...   102   5e-23
gi|300311176|ref|YP_003775268.1| 2-dehydropantoate 2-reductase [...    62   6e-11

>gi|300310685|ref|YP_003774777.1| 2-ketopantoate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 353

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/353 (99%), Positives = 352/353 (99%)

Query: 1   MRDDSISPSAPSAPLRICIAGAGAIGGTLAVRLAAAGHQVSVLARGQTLQAIREHGLTLH 60
           M DDSISPSAPSAPLRICIAGAGAIGGTLAVRLAAAGHQVSVLARGQTLQAIREHGLTLH
Sbjct: 1   MSDDSISPSAPSAPLRICIAGAGAIGGTLAVRLAAAGHQVSVLARGQTLQAIREHGLTLH 60

Query: 61  DLHGTAHARPAADHRPSFGVQDVIFLCAKSQDMAGLLPQVAPMVGETTVVIPTNNGVPWW 120
           DLHGTAHARPAADHRPSFGVQDVIFLCAKSQDMAGLLPQVAPMVGETTVVIPTNNGVPWW
Sbjct: 61  DLHGTAHARPAADHRPSFGVQDVIFLCAKSQDMAGLLPQVAPMVGETTVVIPTNNGVPWW 120

Query: 121 YFHREGGRFDGQTVKAVDPEGALAAALPLAQIIGSVLFITAEVESAGVIRSVNPHLMVLG 180
           YFHREGGRFDGQTVKAVDPEGALAAALPLAQIIGSVLFITAEVESAGVIRSVNPHLMVLG
Sbjct: 121 YFHREGGRFDGQTVKAVDPEGALAAALPLAQIIGSVLFITAEVESAGVIRSVNPHLMVLG 180

Query: 181 EPSGEMSERLLRVRAAVESAGIEARATDRIRDKLWTKIIANISTNPLSVITQGTLQQLYG 240
           EPSGEMSERLLRVRAAVESAGIEARATDRIRDKLWTKIIANISTNPLSVITQGTLQQLYG
Sbjct: 181 EPSGEMSERLLRVRAAVESAGIEARATDRIRDKLWTKIIANISTNPLSVITQGTLQQLYG 240

Query: 241 LPELREVVSQIMRETLLVASSHGARVDIDPLTFLQLGEAMGAFRTSMLQDLERGRPLELA 300
           LPELREVVSQIMRETLLVASSHGARVDIDPLTFLQLGEAMGAFRTSMLQDLERGRPLELA
Sbjct: 241 LPELREVVSQIMRETLLVASSHGARVDIDPLTFLQLGEAMGAFRTSMLQDLERGRPLELA 300

Query: 301 AIGDAVLEMAERYAIPMPITRAIVSLARFRGEAAQQQRAPQTPAAPQPAARAA 353
           AIGDAVLEMAERYAIPMPITRAIVSLARFRGEAAQQQRAPQTPAAPQPAARAA
Sbjct: 301 AIGDAVLEMAERYAIPMPITRAIVSLARFRGEAAQQQRAPQTPAAPQPAARAA 353


>gi|300310480|ref|YP_003774572.1| 2-dehydropantoate 2-reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 151/324 (46%), Gaps = 34/324 (10%)

Query: 15  LRICIAGAGAIGGTLAVRLAAAGHQVSVLARG-QTLQAIREHGLTLHDLHGTAHARPAAD 73
           ++I I GAGA+GG  A RLA AG  VS++     +++AI  HGL+L D  G    R    
Sbjct: 1   MKIAIVGAGAMGGLFAARLALAGQDVSLIEVAPASIEAISSHGLSLTDEDGAHTVRVPVG 60

Query: 74  HRPSF-GVQDVIFLCAKSQDMAGLLPQVAPMVGETTVVIPTNNGVPWWYFHREGGRFDGQ 132
              SF    D+I L  K       +  VA + G  T  +   NG+         G  D  
Sbjct: 61  RADSFQDAFDLIILFTKGFHTQAAIASVAHLAGPHTWALSVQNGL---------GNAD-- 109

Query: 133 TVKAVDPEGALAAALPLAQIIGSVLFITAEVESAGVIRSVNPHLMVLGEPSGEMSERLLR 192
                     +A  +P  +II  +  + A++ + GV+ S     + +   SG+ S +L +
Sbjct: 110 ---------LIAEVIPRERIIVGMTNLPADLRAPGVVHSHGEGQVRIWTLSGQPSAQLTQ 160

Query: 193 VRAAVESAGIEARATDRIRDKLWTKIIANISTNPLSVITQGTLQQLYGLPELREVVSQIM 252
           V A   +AG+   A   ++  +W K+  N + N +  +T  T+         RE+  +I 
Sbjct: 161 VAADFNAAGLPCSADPLVQQAIWEKLAFNAALNAICAVTGLTVGAAGASASGRELALRIA 220

Query: 253 RETLLVASSHGARVDIDPLTFLQLGEAM-GAFRT------SMLQDLERGRPLELAAIGDA 305
            ET+ VA + G    ID    +Q+ +A+  AFRT      SMLQD+E GR  E+  I  A
Sbjct: 221 AETVAVAQAAG----IDA-RLVQVEDAIEHAFRTHLHHKPSMLQDIEAGRRTEIDFINGA 275

Query: 306 VLEMAERYAIPMPITRAIVSLARF 329
           V+  AER  +P+P T+ +  L + 
Sbjct: 276 VVREAERLGLPVPTTQTLHQLVKL 299


>gi|300311176|ref|YP_003775268.1| 2-dehydropantoate 2-reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 3/142 (2%)

Query: 196 AVESAGIEARATDRIRDKLWTKIIANISTNPLSVITQGTLQQLYGLPELREVVSQIMRET 255
           A+ +AG+    +D +R +LW K+I N + N LS I Q    +L   P + EV++Q++ E 
Sbjct: 157 ALVAAGVPTEISDNVRGELWLKLILNCAYNALSAIAQLPYGKLVEGPGIPEVIAQLVTEC 216

Query: 256 LLVASSHGARV--DIDPLTFLQLGEAMGAFRTSMLQDLERGRPLELAAIGDAVLEMAERY 313
             VA++ G  +  D+D     ++ + M    +S  QDL RG+P E+  +   ++  A+ +
Sbjct: 217 KAVAAAEGVTLADDVDS-AVRKIVQTMPGQFSSTAQDLARGKPSEIDHLNGFIVARAQAH 275

Query: 314 AIPMPITRAIVSLARFRGEAAQ 335
            +  P    + +L +     AQ
Sbjct: 276 GLSAPANLTVHALVKLIESKAQ 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 941,161
Number of extensions: 38311
Number of successful extensions: 184
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 3
Length of query: 353
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,212,660
Effective search space: 323780220
Effective search space used: 323780220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)