BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0175.p
         (201 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310688|ref|YP_003774780.1| transcription regulator protein...   399   e-113
gi|300312563|ref|YP_003776655.1| transcription regulator protein...   148   4e-37
gi|300309825|ref|YP_003773917.1| TetR family transcription regul...    60   1e-10

>gi|300310688|ref|YP_003774780.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score =  399 bits (1025), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/199 (98%), Positives = 199/199 (100%)

Query: 1   MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60
           MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH
Sbjct: 1   MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60

Query: 61  EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120
           EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR
Sbjct: 61  EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120

Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180
           FHESGPK+GMER+AAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR
Sbjct: 121 FHESGPKLGMERIAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180

Query: 181 PRMKRMVGRAVETFLAAYA 199
           PRMKRMVGRAVETFLAAYA
Sbjct: 181 PRMKRMVGRAVETFLAAYA 199


>gi|300312563|ref|YP_003776655.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 200

 Score =  148 bits (373), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 119/201 (59%), Gaps = 1/201 (0%)

Query: 1   MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60
           MR K+ ERR A++  AAEVF E GFE ASMA ISARIGGSK TLY+YF SKEE+FV V  
Sbjct: 1   MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60

Query: 61  EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120
           +Q   Q E    AL ++  D++  L       +  + +   +   R+ +  +G+S++G  
Sbjct: 61  KQVGCQFEELFMAL-RNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPL 119

Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180
            +E GPK G  R+A FL  +M+ G+L + DP LA +Q   L++ E ++  ML + + I+ 
Sbjct: 120 LYERGPKRGWTRIAEFLQAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAE 179

Query: 181 PRMKRMVGRAVETFLAAYAPR 201
            ++     RAVE FL  Y PR
Sbjct: 180 DQLDASAQRAVEAFLYLYQPR 200


>gi|300309825|ref|YP_003773917.1| TetR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score = 59.7 bits (143), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 9/149 (6%)

Query: 7   ERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTHEQAKKQ 66
           +R   +LAAA ++F+E G+    +  ++A+ G SKGTLY YF SKE LF +V        
Sbjct: 16  DRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLFKSVVRAHMLPL 75

Query: 67  MEPALAALEKDTG---DLQKTLQVFGEKAVSFLCQESTLQ-THRMIVAESGR-SDIGRRF 121
           ++ A A ++   G   DL + L +   +  S     S L+   ++++AESG   ++ R +
Sbjct: 76  LDEAEARVDSHDGHTADLLRELILGWWQGAS----RSGLKGIAKLMLAESGNFPELARFY 131

Query: 122 HESGPKMGMERLAAFLSRQMQAGRLKQAD 150
           HE     G   L   L R M  G  +  D
Sbjct: 132 HEEITSRGDATLVRVLERGMARGEFRPLD 160


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 513,392
Number of extensions: 17725
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 3
Length of query: 201
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,236,335
Effective search space: 148360200
Effective search space used: 148360200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)