BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0173.p (1049 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 2117 0.0 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 1251 0.0 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 1196 0.0 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 1003 0.0 gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump pr... 678 0.0 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 2117 bits (5485), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1049/1049 (100%), Positives = 1049/1049 (100%) Query: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT Sbjct: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 Query: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS Sbjct: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 Query: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS Sbjct: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 Query: 181 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL 240 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL Sbjct: 181 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL 240 Query: 241 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL Sbjct: 241 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 Query: 301 DTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQ 360 DTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQ Sbjct: 301 DTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQ 360 Query: 361 NFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 NFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM Sbjct: 361 NFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 SEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480 SEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL Sbjct: 421 SEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480 Query: 481 SVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGWRY 540 SVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGWRY Sbjct: 481 SVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGWRY 540 Query: 541 MAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFLVD 600 MAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFLVD Sbjct: 541 MAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFLVD 600 Query: 601 QKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIRDA 660 QKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIRDA Sbjct: 601 QKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIRDA 660 Query: 661 RVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNGLE 720 RVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNGLE Sbjct: 661 RVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNGLE 720 Query: 721 DTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYRML 780 DTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYRML Sbjct: 721 DTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYRML 780 Query: 781 PSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAM 840 PSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAM Sbjct: 781 PSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAM 840 Query: 841 AIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSV 900 AIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSV Sbjct: 841 AIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSV 900 Query: 901 ILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSLVE 960 ILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSLVE Sbjct: 901 ILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSLVE 960 Query: 961 ATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFV 1020 ATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFV Sbjct: 961 ATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFV 1020 Query: 1021 PLFFVIIMTLFGRKPADAPQGQPAISPEH 1049 PLFFVIIMTLFGRKPADAPQGQPAISPEH Sbjct: 1021 PLFFVIIMTLFGRKPADAPQGQPAISPEH 1049 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 1251 bits (3238), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/1042 (59%), Positives = 791/1042 (75%), Gaps = 5/1042 (0%) Query: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 MARFFIDRPIFAWV+AII+ML G++S+ +L + QYP IAPP + I A Y GASAKTLED+ Sbjct: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 Query: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 VTQ+IEQ+MKGLD L YM+++S S+GS T++LTF GTNPD AQ+QVQNKL T LP Sbjct: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 Query: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 VQ G+TVTK++T+ L VL+ TS+D ++ D+ D++++ + D ISRVEGVGD T FG+ Sbjct: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 Query: 181 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL 240 YAMRIW+DP KL Y L P D+ +A+QAQN +VS+G++G LPA QQINATITA+++L Sbjct: 181 NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 Query: 241 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 T D+F+NI++++ G+ VKL DVAR+ELG ESY + NGKP++ LAI+LATGANAL Sbjct: 241 TTPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANAL 300 Query: 301 DTVKAIDKRVAELEKFFPTGMKVQK--PYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLF 358 T A+ K++AELE +FP MK++ YDTTPFVR+S+EEVV+TLIEA+VLV L+MYLF Sbjct: 301 ATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLF 360 Query: 359 LQNFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVER 418 LQN RAT IP I VPVVLLGTFG+LA+FG++INTLTMF MVLAIGLLVDDAIVVVENVER Sbjct: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 Query: 419 VMSEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAM 478 +MSEE L PK+ATRKSM +I+GALVG+A+VL+AVF+PMAFF GSTGVIYRQFSITIVSAM Sbjct: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 Query: 479 TLSVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGW 538 LSV+VAL LTPALCATLLKP A GH + FF WFNR FDRS RYQG V +L RG Sbjct: 481 ALSVMVALTLTPALCATLLKPHAGGH-VQQGRFFTWFNRSFDRSATRYQGGVAGLLKRGK 539 Query: 539 RYMAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFL 598 R + YA++ + FM+LP FLP+EDQG L A +QLP+GAT +T V++ V+++F+ Sbjct: 540 RGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFM 599 Query: 599 VDQKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIR 658 ++ E+V V A+ G G+ QN AFI+LK W++R G G S +++ +A A + IR Sbjct: 600 -NKPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIR 658 Query: 659 DARVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNG 718 ARVF PPAV LG ++GFDL LKD +GH AL+QAR+Q L + L VR G Sbjct: 659 GARVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTG 718 Query: 719 LEDTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYR 778 L+DTP+ R+++D KA AL +A SDIN T+ATA G +YVNDF+ GRVKKV +QGD+ +R Sbjct: 719 LDDTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFR 778 Query: 779 MLPSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGE 838 M D++RWYVRN+A MVPF+AF ++ WT G LERYNGV S EI+G G SSG Sbjct: 779 MQADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAG-VSSGT 837 Query: 839 AMAIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPF 898 AMA VE +A++P GIG+EWTG S QE+ S + +LY +SIL VFL LAALYESW+VPF Sbjct: 838 AMAEVEKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPF 897 Query: 899 SVILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSL 958 +VIL VPLG+ G +L + NDVYFQVGLLTT+GL+ KNAILIVEFAK L+E GKSL Sbjct: 898 AVILAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSL 957 Query: 959 VEATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVF 1018 EAT+EAV++RLRPILMTSLAF+ GVLP+ + SGAG+ ++ A+GT V+GGMLS T+L +F Sbjct: 958 WEATLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIF 1017 Query: 1019 FVPLFFVIIMTLFGRKPADAPQ 1040 FVPLF+ +I R+ A P+ Sbjct: 1018 FVPLFYYLIGAWLDRRAARKPR 1039 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1196 bits (3094), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/1031 (56%), Positives = 755/1031 (73%), Gaps = 4/1031 (0%) Query: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 M +FFIDRP+FAWVLAI +MLAG +++ LP++QYP IAPP I +TA YPGA+A+TL+D+ Sbjct: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 Query: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 VT +IEQ+M G D L Y+ S S+++G V IT+TF TNPD A V VQN+L LP+ Sbjct: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 Query: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 V QQG+ VTKS +NFL + +S DG + L DY++ NV + I RV GVG LFG+ Sbjct: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 Query: 181 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL 240 + AMRIW+DPNKL LTP DV AIQAQNA V+ G LG LP+ QQI AT+ +L Sbjct: 181 ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 Query: 241 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 + +QF NI+LR GA V+LRDVAR+E+G +SY + GR +GKP++ + ++L+ ANAL Sbjct: 241 TSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 Query: 301 DTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQ 360 T A+ K++ EL K+FPTG+K PYDT+ FV+ISIEEVV+TLIEA+VLVFLVM+LFLQ Sbjct: 301 GTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 Query: 361 NFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 N R T+IPTI VPV LLGTF L +FGF+IN LTMF MVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 Query: 421 SEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480 SEEGL P ATRK+MGQISGAL+G+ LVL AVF+PMAFF G+ G IYRQFS+++V++M Sbjct: 421 SEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF 480 Query: 481 SVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGWRY 540 SVL+A LTPALCAT+LKP KGH GFFGWFNR+F+ + YQGI+ ML + RY Sbjct: 481 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAGRY 540 Query: 541 MAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFLVD 600 M Y +++A V +++LP FLP+EDQG + +QLP GA+ +RT V++Q+E+++L D Sbjct: 541 MIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYLKD 600 Query: 601 QKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIRDA 660 AV AV G+SF+G+GQN F LK W +R S +A KA AF+ I+DA Sbjct: 601 --PAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRD-KSQSADAIAGKAFGAFSQIKDA 657 Query: 661 RVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNGLE 720 VF PP + ELGNATGF L+D A LGH AL+QARNQ+LG Q K L VRP GLE Sbjct: 658 IVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGLE 717 Query: 721 DTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYRML 780 D P+ +L +D DKA ALGV S IN ++TA GSSYVNDF + GR ++V++Q DA+ R+ Sbjct: 718 DAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRLQ 777 Query: 781 PSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAM 840 P D+ Y RNS+GTMVPFSAF TA W +G +L RYNG P+M+I G A PG S+GEAM Sbjct: 778 PEDLTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPG-RSTGEAM 836 Query: 841 AIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSV 900 A +E+ +AK+PPG G+EWTG SL+EK S + LY +S++ VFL LAALYES ++P +V Sbjct: 837 AEMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAV 896 Query: 901 ILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSLVE 960 +LVVPLG+ GALLG L NDVYF+VG++ +GL+ KNAILI+EFAKDL GK L+E Sbjct: 897 MLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIE 956 Query: 961 ATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFV 1020 AT+EAV +R RPI+MTSLAFILGVLP+ + SGAG+ +Q A+GT V+GGM++ TVLAVF V Sbjct: 957 ATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLV 1016 Query: 1021 PLFFVIIMTLF 1031 P+FFV++ +F Sbjct: 1017 PIFFVVVRKIF 1027 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 1003 bits (2594), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/1028 (50%), Positives = 701/1028 (68%), Gaps = 6/1028 (0%) Query: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 M RFFIDRPIFAWV+A+ ++L G++++ LPIA+YP++APP ++I A YPGA+ +T+ D Sbjct: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60 Query: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 V +IE+++ G+ L Y S++++SG+ I++TF+ GT+P+ AQV VQNKL LP Sbjct: 61 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 Query: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 V+Q G+TV +A++FL +++ TS DG L+DY+A N+ + + R+EGVG LFG+ Sbjct: 121 TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA 180 Query: 181 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL 240 + AMRIWLDP KLN+YGLT D+ AI QNAQ++ G+LG PA QQI +T Q +L Sbjct: 181 EQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL 240 Query: 241 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 ++ QF IVL+ G++V L DVAR+ELG++SY R NGKPA A++L+ GANA+ Sbjct: 241 QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV 300 Query: 301 DTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQ 360 T AI R+ EL P GM PY+T PFV+ISI++VV+TLIEA+VLVFLVMYLFLQ Sbjct: 301 RTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 Query: 361 NFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 N R T+IP I P+ LLGT V+ + G+++N LTMF MVLAIG++VDDAIVVVENVER+M Sbjct: 361 NVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 Query: 421 SEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480 + EGL P++AT K+MG+I+GA++G+ LVL AVF+PMA GS GVIYRQFS+ + ++ Sbjct: 421 AHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILF 480 Query: 481 SVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGWRY 540 S +AL LTPALCATLL+P GH GFFG FNR F+R RY+ + ++ RG R Sbjct: 481 SAFLALSLTPALCATLLRPVPAGHH-DKRGFFGAFNRAFNRLTARYESALGRLIARGLRM 539 Query: 541 MAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFLVD 600 M YA L L+V G LP FLP+EDQG QLP+ AT RT + Q E++ + Sbjct: 540 MLVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERY--LK 597 Query: 601 QKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIRDA 660 +E + +V GF F+GSG N AF +LK W ERKG S + A A + + D Sbjct: 598 GREDIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKG-STSAAEAMAAQAAMESGV-DG 655 Query: 661 RVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNGLE 720 V + PPA+ ELGN++GF + L+D AN G+AAL A QLL + ++L V +GL Sbjct: 656 MVMSLLPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRKLSGVYSDGLP 715 Query: 721 DTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYRML 780 +L +D KA ALGV+ S I+DT++ A GS YVNDF + GR+++V+LQ A RM Sbjct: 716 AGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQ 775 Query: 781 PSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAM 840 DV + YVRN +G MVP + ASW +L+RY G P++ I G A PG A SGEAM Sbjct: 776 LEDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVA-SGEAM 834 Query: 841 AIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSV 900 A +E ++PPG WTG SLQE+ S+ + +L +S+L+VFL LAALYESW++P SV Sbjct: 835 AEMERLAQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWSIPLSV 894 Query: 901 ILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSLVE 960 +LVVPLG+ GA+ +L NDV+F+VG++T IGL+ KNAILIVEFA+ L G LVE Sbjct: 895 MLVVPLGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRSEGMGLVE 954 Query: 961 ATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFV 1020 A ++A +RLRPILMTSLAF LGV+P++L SGA A Q A+GT V GGM+S TVLAV FV Sbjct: 955 AAIKASVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFV 1014 Query: 1021 PLFFVIIM 1028 P+FFV+++ Sbjct: 1015 PVFFVLVL 1022 >gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1071 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1052 (40%), Positives = 638/1052 (60%), Gaps = 31/1052 (2%) Query: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 +++FFIDRPIFA VL+++++L G++++L LPI++YP + PP++ + A YPGA+ K + +T Sbjct: 3 ISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIAET 62 Query: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 V +E+++ G++ + YM S + S G++TIT+ F G +PD AQ VQN++S A P LP Sbjct: 63 VASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRLPE 122 Query: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 +VQ+ G+T KS+ V+ TS D + L +Y NV+D ++R++GVG+ LFGS Sbjct: 123 DVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLFGS 182 Query: 181 -QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTR 239 YAMR+WLDPNK+ GLT DV AI+ QN QV++G +G P++ + ++ AQ R Sbjct: 183 GNYAMRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGR 242 Query: 240 LRTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANA 299 L+T +F++I+L+ GA +L DVAR+EL + Y + KPA + I A GANA Sbjct: 243 LKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANA 302 Query: 300 LDTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFL 359 LD + + EL FP+ + YD T FVR SIE VV TL+EA+ LV +V+ +FL Sbjct: 303 LDVSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVIIFL 362 Query: 360 QNFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERV 419 Q +RA++IP +AVPV ++GTF ++ FG+TIN L++F MVLAIG++VDDAIVVVENVER Sbjct: 363 QTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVERN 422 Query: 420 MSEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMT 479 + GL P+ AT ++M ++SG ++ +AL L AVFVP+AF +G TG Y+QF++TI Sbjct: 423 IGA-GLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTI----A 477 Query: 480 LSVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDR---------------SNI 524 +S +++ + L L KGH W RQ DR ++ Sbjct: 478 ISTVISAFNSLTLSPALAALLLKGHGDKPD----WLTRQMDRFLGGFFIRFNRFFNRASD 533 Query: 525 RYQGIVRHMLGRGWRYMAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKA 584 Y V ++ R M Y +LLA + +P GF+P +D+ L A QLP+GA+ Sbjct: 534 NYGHGVTGVIKRKGATMGVYVLLLAATLGISYIVPGGFVPGQDKQYLVAFAQLPNGASID 593 Query: 585 RTDEVIRQVEQHFLVDQKEAVSGVFAVSGFSFAG--SGQNMGFAFIKLKPWDERKGPGLS 642 R++EV+R++ L ++ V+ A G S G + + G F+ LKP++ERK LS Sbjct: 594 RSEEVMRKMSDIML--KEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKDLS 651 Query: 643 VTDVAAKAGAAFANIRDARVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLL 702 +AA F +I++A F PP V LG GF + ++D LG+A L +A + Sbjct: 652 GNAIAASLNKKFGSIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFM 711 Query: 703 GELMQDKRLVAVRPNGLEDTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFID 762 ++ L + + + P+ + +D KA LG+ ++D+ +T+ GS YVNDF Sbjct: 712 KAAAKEPALGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNR 771 Query: 763 KGRVKKVMLQGDAQYRMLPSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPS 822 GRV +V Q DA +R D+ + RN AG MVP S+ T G + RYNG + Sbjct: 772 FGRVYQVRAQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTA 831 Query: 823 MEILGMALPGAASSGEAMAIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGI-LYGVSIL 881 +I G PG +S A A A +P GI +EWT L+ Q K +G G+ ++ +S+L Sbjct: 832 ADINGGPAPGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQ-KILAGNAGVWVFPISVL 890 Query: 882 IVFLALAALYESWAVPFSVILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNA 941 +VFL LAALYES +P +VIL+VP+ + AL G LT N+++ Q+GL+ +GL+ KNA Sbjct: 891 LVFLVLAALYESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNA 950 Query: 942 ILIVEFAKDLYEHGKSLVEATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHAL 1001 ILIVEFA++L G++ V+A +EA R+RLRPILMTS+AFI+GV+P+V SGAG+ +HA+ Sbjct: 951 ILIVEFARELEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAM 1010 Query: 1002 GTAVIGGMLSGTVLAVFFVPLFFVIIMTLFGR 1033 G AV GML T+ +F P+F+V++ T+ R Sbjct: 1011 GIAVFFGMLGVTLFGLFLTPVFYVLLRTIDRR 1042 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,015,984 Number of extensions: 123147 Number of successful extensions: 613 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 533 Number of HSP's successfully gapped: 15 Length of query: 1049 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 954 Effective length of database: 1,170,045 Effective search space: 1116222930 Effective search space used: 1116222930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)