BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0171.p (222 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311431|ref|YP_003775523.1| sulfate/molybdate ABC transport... 436 e-124 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 155 2e-39 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 153 8e-39 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 147 5e-37 gi|300312610|ref|YP_003776702.1| spermidine/putrescine ABC trans... 144 7e-36 >gi|300311431|ref|YP_003775523.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 222 Score = 436 bits (1122), Expect = e-124, Method: Compositional matrix adjust. Identities = 219/222 (98%), Positives = 220/222 (99%) Query: 1 VSLDLQIQKQLHAGDRRFALDLSLVSASQRIVLYGPSGAGKSLTLKAIAGLMRPDSGHIR 60 +SLDLQIQKQLHA DRRFALDLSLVSASQRIVLYGPSGAGKSLTLKAIAGLMRPDSG IR Sbjct: 1 MSLDLQIQKQLHASDRRFALDLSLVSASQRIVLYGPSGAGKSLTLKAIAGLMRPDSGRIR 60 Query: 61 LNGRTLFNSNEGIDLPVQGRNVAYLFQDYALFPHLSVAQNIAFGLARGCFNLRRPAQHPA 120 LNGRTLFNSNEGIDLPVQGRNVAYLFQDYALFPHLSVAQNIAFGLARGCFNLRRPAQHPA Sbjct: 61 LNGRTLFNSNEGIDLPVQGRNVAYLFQDYALFPHLSVAQNIAFGLARGCFNLRRPAQHPA 120 Query: 121 VAKWLRAFELDDIAHSRPAQISGGQRQRVALARALVAEPDILLLDEPFSALDLSLRERMR 180 VAKWLRAFELDDIAHSRPAQISGGQRQRVALARALVAEPDILLLDEPFSALDLSLRERMR Sbjct: 121 VAKWLRAFELDDIAHSRPAQISGGQRQRVALARALVAEPDILLLDEPFSALDLSLRERMR 180 Query: 181 AELAELQAQLQVPMLLITHDPADVEALGQTVFELRDGRLHQG 222 AELAELQAQLQVPMLLITHDPADVEALGQTVFELRDGRLHQG Sbjct: 181 AELAELQAQLQVPMLLITHDPADVEALGQTVFELRDGRLHQG 222 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 155 bits (393), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 133/226 (58%), Gaps = 16/226 (7%) Query: 1 VSLDL-QIQKQLHAGDRRF-ALDLSLVSASQRIVLYGPSGAGKSLTLKAIAGLMRPDSGH 58 VS+ L Q K G R LDL + + +VL GPSG GK+ TL+ IAGL PD G Sbjct: 8 VSIRLSQCAKSFANGTRALQPLDLQ-IHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEG- 65 Query: 59 IRLNGRTLFNSNEGIDLPVQGRNVAYLFQDYALFPHLSVAQNIAFGLARGCFNLRRPA-- 116 GR LF + LP++ R V +FQ+YALFP++SV +NIA+G+ +R+ A Sbjct: 66 ----GRVLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGM-----KIRKIAAG 116 Query: 117 -QHPAVAKWLRAFELDDIAHSRPAQISGGQRQRVALARALVAEPDILLLDEPFSALDLSL 175 + V + L L ++H R Q+SGGQ+QRVALARAL EP +LLLDEP +ALD L Sbjct: 117 ERAERVERLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKL 176 Query: 176 RERMRAELAELQAQLQVPMLLITHDPADVEALGQTVFELRDGRLHQ 221 RE +R++L +L L + + +THD + ALG + + G++ Q Sbjct: 177 REAVRSDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQ 222 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 153 bits (387), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 88/200 (44%), Positives = 120/200 (60%), Gaps = 14/200 (7%) Query: 25 VSASQRIVLYGPSGAGKSLTLKAIAGLMRPDSGHIRLNGRTLFNSNEGIDLPVQGRNVAY 84 V A Q VL GPSG GKS TL+ IAGL +P SG I + GR + LP R ++ Sbjct: 26 VKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHIGGRDV------TQLPPAQRKISM 79 Query: 85 LFQDYALFPHLSVAQNIAFGLARGCFNLRRPAQHPAVAKWLRAFELDDIAH---SRPAQI 141 +FQ YALFPHLSV NI FG+ +R+ + + R ++ +AH RPAQ+ Sbjct: 80 VFQSYALFPHLSVRDNILFGV-----RVRKEPRAGYETRLKRVADILGLAHLLERRPAQL 134 Query: 142 SGGQRQRVALARALVAEPDILLLDEPFSALDLSLRERMRAELAELQAQLQVPMLLITHDP 201 SGGQ+QRVAL RA++A+ + L+DEP S LD LR+ MR E+ LQ QL + M+ +THD Sbjct: 135 SGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQLNMTMVYVTHDQ 194 Query: 202 ADVEALGQTVFELRDGRLHQ 221 + ++ V LR+GR+ Q Sbjct: 195 TEAMSMADQVILLREGRIEQ 214 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 147 bits (372), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 82/194 (42%), Positives = 117/194 (60%), Gaps = 8/194 (4%) Query: 31 IVLYGPSGAGKSLTLKAIAGLMRPDSGHIRLNGRTLFNSNEGIDLPVQGRNVAYLFQDYA 90 + L GPSG+GK+ L+A+AGL P +G I + R +F+ ++P + RN+ +FQ YA Sbjct: 36 VALLGPSGSGKTTLLRAVAGLESPKAGAIDIGKRRVFDGARNFEMPAEERNLGLVFQSYA 95 Query: 91 LFPHLSVAQNIAFGLARGCFNLRR-PAQHPA--VAKWLRAFELDDIAHSRPAQISGGQRQ 147 L+PH +VA N+A+GL LR+ P+ A V L L + P Q+SGGQ+Q Sbjct: 96 LWPHKTVADNVAYGL-----KLRKTPSGEIATRVKAVLSQLGLGHLGERYPHQLSGGQQQ 150 Query: 148 RVALARALVAEPDILLLDEPFSALDLSLRERMRAELAELQAQLQVPMLLITHDPADVEAL 207 RVA+ARALV P ++LLDEP S LD LRE RA L EL +L + L++THD + A+ Sbjct: 151 RVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALMVTHDQGEAMAI 210 Query: 208 GQTVFELRDGRLHQ 221 + L +GR+ Q Sbjct: 211 SDRILLLNNGRIEQ 224 >gi|300312610|ref|YP_003776702.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 434 Score = 144 bits (362), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 85/189 (44%), Positives = 119/189 (62%), Gaps = 6/189 (3%) Query: 33 LYGPSGAGKSLTLKAIAGLMRPDSGHIRLNGRTLFNSNEGIDLPVQGRNVAYLFQDYALF 92 L GPSG+GK+ L+A+AGL +G IRL+G+ L G+ +P + R + +FQD+ALF Sbjct: 56 LIGPSGSGKTSLLRAVAGLEPAQAGLIRLDGQLL--EGGGVRVPAEQRRIGMVFQDFALF 113 Query: 93 PHLSVAQNIAFGLARGCFNLRRPAQHPAVAKWLRAFELDDIAHSRPAQISGGQRQRVALA 152 PHL+VA NIAFGL RG R A VA L L + P Q+SGGQ+QR+ALA Sbjct: 114 PHLNVADNIAFGL-RGRDKRERSA---IVAGMLALVGLPEAGAKFPHQLSGGQQQRIALA 169 Query: 153 RALVAEPDILLLDEPFSALDLSLRERMRAELAELQAQLQVPMLLITHDPADVEALGQTVF 212 RAL +P +LLLDEPFS+LD+ LRER+ ++ ++ + L++THD + A+ V Sbjct: 170 RALAPQPRLLLLDEPFSSLDVELRERLAHDVRDILKRTHTTALMVTHDQMEAFAVADVVG 229 Query: 213 ELRDGRLHQ 221 +R G+L Q Sbjct: 230 VMRQGQLEQ 238 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 671,162 Number of extensions: 26220 Number of successful extensions: 452 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 271 Number of HSP's successfully gapped: 137 Length of query: 222 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 140 Effective length of database: 1,231,600 Effective search space: 172424000 Effective search space used: 172424000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)