BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0165.p
         (448 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311437|ref|YP_003775529.1| signal transduction containing ...   916   0.0  
gi|300311452|ref|YP_003775544.1| signal transduction containing ...   104   1e-23

>gi|300311437|ref|YP_003775529.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/448 (100%), Positives = 448/448 (100%)

Query: 1   MSDQSSDQSTSTHQALDFYLARQPILSREQHLIGYELLFRSAAFGPANVKDDVTATAAVI 60
           MSDQSSDQSTSTHQALDFYLARQPILSREQHLIGYELLFRSAAFGPANVKDDVTATAAVI
Sbjct: 1   MSDQSSDQSTSTHQALDFYLARQPILSREQHLIGYELLFRSAAFGPANVKDDVTATAAVI 60

Query: 61  AHASELGLSNVIGNLQGFINVDAAVLMSDFIYFLPNDKVVLEILETVRVTPELVVRVREL 120
           AHASELGLSNVIGNLQGFINVDAAVLMSDFIYFLPNDKVVLEILETVRVTPELVVRVREL
Sbjct: 61  AHASELGLSNVIGNLQGFINVDAAVLMSDFIYFLPNDKVVLEILETVRVTPELVVRVREL 120

Query: 121 VKAGYVFALDDVVAESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHFKRAQKELLAEKV 180
           VKAGYVFALDDVVAESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHFKRAQKELLAEKV
Sbjct: 121 VKAGYVFALDDVVAESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHFKRAQKELLAEKV 180

Query: 181 ETLQQFNDCVTFGFDYFQGYYFAKPMILQGKKLEASKMVIMHLLTLLVRNVDNGEIVRFI 240
           ETLQQFNDCVTFGFDYFQGYYFAKPMILQGKKLEASKMVIMHLLTLLVRNVDNGEIVRFI
Sbjct: 181 ETLQQFNDCVTFGFDYFQGYYFAKPMILQGKKLEASKMVIMHLLTLLVRNVDNGEIVRFI 240

Query: 241 KRDVALSLTLLRLVNTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILLFANTDKEQAHTM 300
           KRDVALSLTLLRLVNTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILLFANTDKEQAHTM
Sbjct: 241 KRDVALSLTLLRLVNTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILLFANTDKEQAHTM 300

Query: 301 SPLMILAATRGKMLELITTRIRPGRRKMSEMAFTVGIMSLVDALFGMSMETVLRQITVST 360
           SPLMILAATRGKMLELITTRIRPGRRKMSEMAFTVGIMSLVDALFGMSMETVLRQITVST
Sbjct: 301 SPLMILAATRGKMLELITTRIRPGRRKMSEMAFTVGIMSLVDALFGMSMETVLRQITVST 360

Query: 361 EIREALLRRTGFYGVALRLVECTEQRDQDQAEMQRLLDELQLSADDFFEAEKHAFEWGNS 420
           EIREALLRRTGFYGVALRLVECTEQRDQDQAEMQRLLDELQLSADDFFEAEKHAFEWGNS
Sbjct: 361 EIREALLRRTGFYGVALRLVECTEQRDQDQAEMQRLLDELQLSADDFFEAEKHAFEWGNS 420

Query: 421 ISNNNIGAQASMHMSPPPEGFIDDDDDD 448
           ISNNNIGAQASMHMSPPPEGFIDDDDDD
Sbjct: 421 ISNNNIGAQASMHMSPPPEGFIDDDDDD 448


>gi|300311452|ref|YP_003775544.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 399

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 173/361 (47%), Gaps = 12/361 (3%)

Query: 64  SELGLSNVIGNLQGFINV-DAAVLMSDFIYFLPNDKVVLEILETVRVTPELVVRVRELVK 122
           +E  L + +G L   I V D A    +F    P  ++ L +     V P  +  +  L  
Sbjct: 48  NEFELHDALGGLNCIIPVSDPASFAPEFREQFPQGQLALRVPVEHCVDPARIDALDWLYS 107

Query: 123 AGYVFALDDVVAESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHFKRAQKELLAEKVET 182
            G+    D + A+   +    P V+ I   V++    KL + +      +   LAE V  
Sbjct: 108 RGFSILADGLPAQGASV---FPFVESI---VLDASIGKLPETAQWLHGLRGPHLAENVAD 161

Query: 183 LQQFNDCVTFGFDYFQGYYFAKPMILQGKKLEASKMVIMHLLTLLVRNVDNGEIVRFIKR 242
             QF+ C   GF +F G Y   P     +K   S+  ++ LL L+ R+ D  E+   +K+
Sbjct: 162 AVQFDACRVQGFRWFSGDYALHPDSRLSQKNSISRARLLKLLELVARDADANELESLLKQ 221

Query: 243 DVALSLTLLRLVNTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILLFANTDKEQAHTMSP 302
           D ALS  L +LV++  +GF   I +  QA+ +LGRRQL+RWLQ+LL+A    ++  + +P
Sbjct: 222 DPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWLQLLLYARFPGDE--SANP 279

Query: 303 LMILAATRGKMLELITTRIRPGRRKMSEMAFTVGIMSLVDALFGMSMETVLRQITVSTEI 362
           L+  AA R  M+E +   I   + ++ + AF  G+ SL+D L GM +  ++  + +  +I
Sbjct: 280 LLPRAAARAAMMEAMAQCIDCTQEEL-DRAFITGMFSLLDILLGMPLNDIIEPLKLPVDI 338

Query: 363 REALLRRTGFYGVALRLVECTEQRDQDQAEMQRLLDELQLSADDFFEAEKHAFEWGNSIS 422
             AL+RR+G  G  L +VE +E  D         LD   L A+ +      AF W   +S
Sbjct: 339 VNALVRRSGRLGKLLDVVERSE--DGRIPLRHSDLDAAGLDAEVYCRCLIQAFNWATRVS 396

Query: 423 N 423
            
Sbjct: 397 T 397


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,186,965
Number of extensions: 44673
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 2
Length of query: 448
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,203,190
Effective search space: 433148400
Effective search space used: 433148400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)