BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0161.p
         (446 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311441|ref|YP_003775533.1| membrane-anchored protein [Herb...   915   0.0  

>gi|300311441|ref|YP_003775533.1| membrane-anchored protein
           [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/446 (100%), Positives = 446/446 (100%)

Query: 1   MSIVFASLNHPQRVVLAAEVHSRPFLQLTRSETLTHLAVYVREDGNGSRHASAQHALLDD 60
           MSIVFASLNHPQRVVLAAEVHSRPFLQLTRSETLTHLAVYVREDGNGSRHASAQHALLDD
Sbjct: 1   MSIVFASLNHPQRVVLAAEVHSRPFLQLTRSETLTHLAVYVREDGNGSRHASAQHALLDD 60

Query: 61  LCAHFGVVAPGGEAKHFYHDFGRFRLKWECHTEFATYTFAQAHEEAISTDDAFARAPLAH 120
           LCAHFGVVAPGGEAKHFYHDFGRFRLKWECHTEFATYTFAQAHEEAISTDDAFARAPLAH
Sbjct: 61  LCAHFGVVAPGGEAKHFYHDFGRFRLKWECHTEFATYTFAQAHEEAISTDDAFARAPLAH 120

Query: 121 IPQQWLISLKGKLMVAAHVVVEPGDDDPADTARQMQRIFEGKLMSSSKVLQGGEIWTDFK 180
           IPQQWLISLKGKLMVAAHVVVEPGDDDPADTARQMQRIFEGKLMSSSKVLQGGEIWTDFK
Sbjct: 121 IPQQWLISLKGKLMVAAHVVVEPGDDDPADTARQMQRIFEGKLMSSSKVLQGGEIWTDFK 180

Query: 181 IQSDGFSRFIVRDIGLRELQGGRLAQRILEIETYRMMALLGLPHAQQSGPLLNEIEGDLA 240
           IQSDGFSRFIVRDIGLRELQGGRLAQRILEIETYRMMALLGLPHAQQSGPLLNEIEGDLA
Sbjct: 181 IQSDGFSRFIVRDIGLRELQGGRLAQRILEIETYRMMALLGLPHAQQSGPLLNEIEGDLA 240

Query: 241 ALTAAMVQSEQSTGGTPEEQAEDERVLRKITGLAARIEKLSLENSYRFSASQAYFRLVQA 300
           ALTAAMVQSEQSTGGTPEEQAEDERVLRKITGLAARIEKLSLENSYRFSASQAYFRLVQA
Sbjct: 241 ALTAAMVQSEQSTGGTPEEQAEDERVLRKITGLAARIEKLSLENSYRFSASQAYFRLVQA 300

Query: 301 RIEELREQRIEGVPTIGEFMERRLAPAMNTCQAIARRQEALAERIAHTNDLLRTRIGIVQ 360
           RIEELREQRIEGVPTIGEFMERRLAPAMNTCQAIARRQEALAERIAHTNDLLRTRIGIVQ
Sbjct: 301 RIEELREQRIEGVPTIGEFMERRLAPAMNTCQAIARRQEALAERIAHTNDLLRTRIGIVQ 360

Query: 361 EQQNRQILESMNARAAQQLKLQQAVEGLSVAAISYYVIGLIGYAGKAAKAAGLPINPDLA 420
           EQQNRQILESMNARAAQQLKLQQAVEGLSVAAISYYVIGLIGYAGKAAKAAGLPINPDLA
Sbjct: 361 EQQNRQILESMNARAAQQLKLQQAVEGLSVAAISYYVIGLIGYAGKAAKAAGLPINPDLA 420

Query: 421 TGLVVPVVAACVWLGLRRMHKGLGNH 446
           TGLVVPVVAACVWLGLRRMHKGLGNH
Sbjct: 421 TGLVVPVVAACVWLGLRRMHKGLGNH 446


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,375,649
Number of extensions: 56968
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 358
Effective length of database: 1,203,190
Effective search space: 430742020
Effective search space used: 430742020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)