BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0151.p
         (379 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311452|ref|YP_003775544.1| signal transduction containing ...   759   0.0  
gi|300311437|ref|YP_003775529.1| signal transduction containing ...   149   4e-37

>gi|300311452|ref|YP_003775544.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 399

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/379 (99%), Positives = 377/379 (99%)

Query: 1   VHHVWTALSLHISPAVEDGSALLARLFNEFELHDALGGLTCIIPVSDPASFAPEFREQFP 60
           VHHVWTALSLHISPAVEDGSALLARLFNEFELHDALGGL CIIPVSDPASFAPEFREQFP
Sbjct: 21  VHHVWTALSLHISPAVEDGSALLARLFNEFELHDALGGLNCIIPVSDPASFAPEFREQFP 80

Query: 61  QGQLALRVPVEHCVDPARIDALDWLYSRGFSIIADGLPAQGASVFPFVESIVLDASIGKL 120
           QGQLALRVPVEHCVDPARIDALDWLYSRGFSI+ADGLPAQGASVFPFVESIVLDASIGKL
Sbjct: 81  QGQLALRVPVEHCVDPARIDALDWLYSRGFSILADGLPAQGASVFPFVESIVLDASIGKL 140

Query: 121 PETAQWLHGLRGPHLAENVADAVQFDACRVQGFRWFSGDYALHPDSRLSQKNSISRARLL 180
           PETAQWLHGLRGPHLAENVADAVQFDACRVQGFRWFSGDYALHPDSRLSQKNSISRARLL
Sbjct: 141 PETAQWLHGLRGPHLAENVADAVQFDACRVQGFRWFSGDYALHPDSRLSQKNSISRARLL 200

Query: 181 KLLELVARDADANELESLLKQDPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQ 240
           KLLELVARDADANELESLLKQDPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQ
Sbjct: 201 KLLELVARDADANELESLLKQDPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQ 260

Query: 241 RWLQLLLYARFPGDESANPLLPRAAARAAMMEAMAQRIDCTQEELDRAFITGMFSLLDIL 300
           RWLQLLLYARFPGDESANPLLPRAAARAAMMEAMAQ IDCTQEELDRAFITGMFSLLDIL
Sbjct: 261 RWLQLLLYARFPGDESANPLLPRAAARAAMMEAMAQCIDCTQEELDRAFITGMFSLLDIL 320

Query: 301 LGMPLNDIIEPLKLPVDIVNALVRRSGRLGKLLDVVERSEDGRIPLRHSDLDAAGLDAEV 360
           LGMPLNDIIEPLKLPVDIVNALVRRSGRLGKLLDVVERSEDGRIPLRHSDLDAAGLDAEV
Sbjct: 321 LGMPLNDIIEPLKLPVDIVNALVRRSGRLGKLLDVVERSEDGRIPLRHSDLDAAGLDAEV 380

Query: 361 YCRCLIQAFNWATRVSTEA 379
           YCRCLIQAFNWATRVSTEA
Sbjct: 381 YCRCLIQAFNWATRVSTEA 399


>gi|300311437|ref|YP_003775529.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 174/361 (48%), Gaps = 12/361 (3%)

Query: 28  NEFELHDALGGLTCIIPVSDPASFAPEFREQFPQGQLALRVPVEHCVDPARIDALDWLYS 87
           +E  L + +G L   I V D A    +F    P  ++ L +     V P  +  +  L  
Sbjct: 64  SELGLSNVIGNLQGFINV-DAAVLMSDFIYFLPNDKVVLEILETVRVTPELVVRVRELVK 122

Query: 88  RGFSIIADGLPAQGASV---FPFVESI---VLDASIGKLPETAQWLHGLRGPHLAENVAD 141
            G+    D + A+   +    P V+ I   V++    KL + +      +   LAE V  
Sbjct: 123 AGYVFALDDVVAESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHFKRAQKELLAEKVET 182

Query: 142 AVQFDACRVQGFRWFSGDYALHPDSRLSQKNSISRARLLKLLELVARDADANELESLLKQ 201
             QF+ C   GF +F G Y   P     +K   S+  ++ LL L+ R+ D  E+   +K+
Sbjct: 183 LQQFNDCVTFGFDYFQGYYFAKPMILQGKKLEASKMVIMHLLTLLVRNVDNGEIVRFIKR 242

Query: 202 DPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWLQLLLYARFPGDE--SANP 259
           D ALS  L +LV++  +GF   I +  QA+ +LGRRQL+RWLQ+LL+A    ++  + +P
Sbjct: 243 DVALSLTLLRLVNTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILLFANTDKEQAHTMSP 302

Query: 260 LLPRAAARAAMMEAMAQRIDCTQEEL-DRAFITGMFSLLDILLGMPLNDIIEPLKLPVDI 318
           L+  AA R  M+E +  RI   + ++ + AF  G+ SL+D L GM +  ++  + +  +I
Sbjct: 303 LMILAATRGKMLELITTRIRPGRRKMSEMAFTVGIMSLVDALFGMSMETVLRQITVSTEI 362

Query: 319 VNALVRRSGRLGKLLDVVERSE--DGRIPLRHSDLDAAGLDAEVYCRCLIQAFNWATRVS 376
             AL+RR+G  G  L +VE +E  D         LD   L A+ +      AF W   +S
Sbjct: 363 REALLRRTGFYGVALRLVECTEQRDQDQAEMQRLLDELQLSADDFFEAEKHAFEWGNSIS 422

Query: 377 T 377
            
Sbjct: 423 N 423


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,137,110
Number of extensions: 46195
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,207,925
Effective search space: 352714100
Effective search space used: 352714100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)