BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0146.p
         (93 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311457|ref|YP_003775549.1| hypothetical protein Hsero_2142...   187   2e-49
gi|300313862|ref|YP_003777954.1| hypothetical protein Hsero_4580...    53   4e-09

>gi|300311457|ref|YP_003775549.1| hypothetical protein Hsero_2142
          [Herbaspirillum seropedicae SmR1]
          Length = 93

 Score =  187 bits (474), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/93 (98%), Positives = 93/93 (100%)

Query: 1  MNIKNIVVAASLLAAAGAAMAEAPYPPETAFHSTKTRADVQAELVRARANGEIAVRNEYP 60
          MNIKNIVVAASLLAAAGAAMAEAPYPPETAFHSTKTRADVQAELVRARANGEIAVRNEYP
Sbjct: 1  MNIKNIVVAASLLAAAGAAMAEAPYPPETAFHSTKTRADVQAELVRARANGEIAVRNEYP 60

Query: 61 IIHQAPSTLSRQDVQNQLRQASSTAQQDLYSGA 93
          I+HQAPSTLSRQDVQNQLRQASSTAQQDLYSGA
Sbjct: 61 IVHQAPSTLSRQDVQNQLRQASSTAQQDLYSGA 93


>gi|300313862|ref|YP_003777954.1| hypothetical protein Hsero_4580
          [Herbaspirillum seropedicae SmR1]
          Length = 86

 Score = 53.1 bits (126), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 1  MNIKNIVVAASLLAAAGAAMAEAPYPPETAFHSTKTRADVQAELVRARANGEI-AVRNEY 59
          M+ K ++ A   L+A+  A+AEAPYP E  F S  TRA V+A+L RA+A G +  V + Y
Sbjct: 1  MSAKTLIAAVLALSASSIALAEAPYPVEKPFVSQTTRAAVKADLARAQAQGTVNQVDSVY 60

Query: 60 PIIHQAPSTLSRQDVQNQLRQASSTAQQDLYSGA 93
          P++       ++ +VQ     A+ST     Y+GA
Sbjct: 61 PVVSNGA---AKSEVQTAGSVAAST-----YAGA 86


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.121    0.323 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 196,343
Number of extensions: 5403
Number of successful extensions: 13
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 2
Length of query: 93
Length of database: 1,619,870
Length adjustment: 63
Effective length of query: 30
Effective length of database: 1,321,565
Effective search space: 39646950
Effective search space used: 39646950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)