BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0128.p (658 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbasp... 1315 0.0 gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbasp... 304 2e-83 gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbasp... 237 2e-63 gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbasp... 221 1e-58 gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel A... 91 3e-19 >gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 660 Score = 1315 bits (3402), Expect = 0.0, Method: Compositional matrix adjust. Identities = 652/660 (98%), Positives = 653/660 (98%), Gaps = 2/660 (0%) Query: 1 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDF 60 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDF Sbjct: 1 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDF 60 Query: 61 PARWRMAYVAQETPALDRPAIEYAIDGDAHLRQLEAELARAEAQPDDKHDGNHIAELHTA 120 PARWRMAYVAQETPALDRPAIEYAIDGDAHLRQLEAELARAEAQPDDKHDGNHIAELHTA Sbjct: 61 PARWRMAYVAQETPALDRPAIEYAIDGDAHLRQLEAELARAEAQPDDKHDGNHIAELHTA 120 Query: 121 LADADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEP 180 LADADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEP Sbjct: 121 LADADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEP 180 Query: 181 TNHLDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAFER 240 TNHLDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAFER Sbjct: 181 TNHLDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAFER 240 Query: 241 QRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAA 300 QRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAA Sbjct: 241 QRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAA 300 Query: 301 EFSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGAPDEDKIIVHGIDFSLQNGQRIGLLGV 360 EFSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGAPDEDKIIVHGIDFSLQNGQRIGLLGV Sbjct: 301 EFSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGAPDEDKIIVHGIDFSLQNGQRIGLLGV 360 Query: 361 NGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLAPDVR 420 NGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLAPDVR Sbjct: 361 NGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLAPDVR 420 Query: 421 EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETR 480 EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETR Sbjct: 421 EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETR 480 Query: 481 EALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDDYKDWLFKTKL-- 538 EALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDDYKDWLFKTKL Sbjct: 481 EALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDDYKDWLFKTKLAA 540 Query: 539 AARNDAAAPLPTASQPVETAPAALVDRKEQKRLEAEQRQKMSALKKPIEARIKRLDEQIA 598 AAAPLPTASQPVE+APAALVDRKEQKRLEAEQRQKMSALKKPIEARIKRLDEQIA Sbjct: 541 RNDAAAAAPLPTASQPVESAPAALVDRKEQKRLEAEQRQKMSALKKPIEARIKRLDEQIA 600 Query: 599 KLNVRKAEIDARLASPDIYDAANKEELKTLITDQAYCSKELEQLENEWLEQQEALEQLQA 658 KLNVRKAEIDARLASPDIYDAANKEELKTLITDQAYCSKELEQLENEWLEQQEALEQLQA Sbjct: 601 KLNVRKAEIDARLASPDIYDAANKEELKTLITDQAYCSKELEQLENEWLEQQEALEQLQA 660 >gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 532 Score = 304 bits (778), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 183/541 (33%), Positives = 284/541 (52%), Gaps = 28/541 (5%) Query: 1 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDF 60 M+ +++Q G KPL EN+ + G++ GLIGANG GKS+ +L G+L GN+ Sbjct: 1 MLSTANITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60 Query: 61 PARWRMAYVAQETPALDRP-AIEYAIDGDAHLRQLEAELARAEAQPDDKHDGN-HIAELH 118 R+ + Q+ A + ++ + G + +E A PD D A+L Sbjct: 61 DVNERLGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLE 120 Query: 119 TALADADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLD 178 A+ D YT +RA +LLLG+G +EQ P+++ + GW++R+ LAQAL D+LLLD Sbjct: 121 AKFAEYDGYTAEARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLD 180 Query: 179 EPTNHLDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAF 238 EPTN+LD++ I WLE+ L T++IISHDR FL+ V + +D LK Y GNY + Sbjct: 181 EPTNNLDINTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDY 240 Query: 239 ----ERQRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELA 294 + R+ QL A K + + A LQ F+ RF A +KARQA SR K + K++ Sbjct: 241 MLASSQARAQQLAANA----KAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIK--- 293 Query: 295 PLRAAAEFSFEFREPLSAPNPLLVMEKVNAGYH--IEGKNGAPDEDKIIVHGIDFSLQNG 352 E +P S NP + E + +E + D+ I ++ G Sbjct: 294 ---------VEDIKPSSRVNPFIRFEGEKKLHRLAVETQGITKTYDRDIFKNFSIMVEAG 344 Query: 353 QRIGLLGVNGAGKSTLIKTVAGEID---PLSGTARLGKGLVIGYFAQHQVEMLRHDESPL 409 ++I ++G NGAGK+TL++++ G++ P G + + +GY Q E E+ Sbjct: 345 EKIAIIGANGAGKTTLLRSIGGDVTGLHPDGGLVKWAENANVGYMPQDPTEEFAGGETLT 404 Query: 410 -WHLTRLAPDVREQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLL 468 W +Q +R LG F+G S+ SGGEK R+ ++ R N+LL+ Sbjct: 405 DWMGKWTQEGDDDQAVRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLM 464 Query: 469 DEPTNHLDLETREALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDD 528 DEPTNH+D+E+ E+L +AL ++ GTL+ VSHDR + + + L V +G++ F G +D Sbjct: 465 DEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVKDGQVIDFQGGYED 524 Query: 529 Y 529 Y Sbjct: 525 Y 525 >gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 640 Score = 237 bits (605), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 193/649 (29%), Positives = 304/649 (46%), Gaps = 60/649 (9%) Query: 1 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDF 60 +I L G LL++ + +L G++IGLIG NG GKSSL ++ G D G + Sbjct: 3 VISLSDAQLAFGHVALLDHAEFSLETGERIGLIGRNGTGKSSLLKIIAGRSKLDDGLLVM 62 Query: 61 PARWRMAYVAQETPALDRPAIEYAI-DGDAHLRQLEAELARAEAQPDDKHDGNHIAELH- 118 ++AYV QE + + A+ G L L AE Q +D + +H Sbjct: 63 QQNLKIAYVDQEPHFPEEMTVFDAVASGLGELPALLAEYEAITGQFGGDNDDALLERMHQ 122 Query: 119 --TALADADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLL 176 T L ADA+++ ++ E L L + + + SGG + R+ LA L+ D+LL Sbjct: 123 IQTVLDAADAWSIGNKVETTLDKLNLNRDAR---IGELSGGMKKRVALACGLVGNPDVLL 179 Query: 177 LDEPTNHLDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYS 236 LDEPTNHLD +I+WLE L+ ++G++L I+HDR FLD V I+ +D K+ + GN++ Sbjct: 180 LDEPTNHLDFGSILWLEGLLRDFKGSILFITHDRSFLDNVSTRIIELDRGKILSFPGNFT 239 Query: 237 AFERQRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPL 296 ++ +++ EL+A ++ + A F+ + + K QA+ R + ++ L L Sbjct: 240 TYQTRKA---ELLA----NEEVENAKFDKFLAQEEVWIRKGVQAR-RTRDEGRVRRLEAL 291 Query: 297 RA--------AAEFSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGAPDEDKIIVHGIDFS 348 R + E + + +E VN Y P K IV Sbjct: 292 RVQRSERRERQGQVKLEVGTGERSGKIVAELENVNKAY-------GP---KTIVRDFSTI 341 Query: 349 LQNGQRIGLLGVNGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESP 408 L G ++GL+G NGAGK+TL+K + GE P SGT + G + + YF Q + ++ ++E+ Sbjct: 342 LMRGDKVGLIGQNGAGKTTLLKLILGEEAPDSGTVKQGTKMQVAYFDQMRAQL--NEETT 399 Query: 409 LWHLTRLAPDVRE-----QELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRP 463 L D E + + +L F F A S + SGGE+ RL LA + + Sbjct: 400 LADTIAPGSDWVEVNGQRKHVMTYLSDFLFAPERARSPVRTLSGGERNRLLLARLFAKPA 459 Query: 464 NLLLLDEPTNHLDLETREALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFD 523 N+L+LDEPTN LD++T E L L ++EGT+ LVSHDR L Q +I +EG Sbjct: 460 NVLVLDEPTNDLDIDTLELLEELLEEYEGTVFLVSHDRMFLDNVVTQ-VIASEG------ 512 Query: 524 GDLDDYKDWLFKTKLAARNDAAAPLPTASQPVETAPAALVDRKEQK------RLEAEQRQ 577 + +++ + +D P A A D+ E K Sbjct: 513 -------NGVWREYVGGYSDWERQRPAQQAASSKAAAKAADKSEVKAESTMAAPVVAPVA 565 Query: 578 KMSALKKPIEARIKRLDEQIAKLNVRKAEIDARLASPDIYDAANKEELK 626 L + + L ++IA L + E+ A+LA PD+Y E +K Sbjct: 566 AKKKLSYKEQRELDELPKRIAALEAEQKELSAKLADPDLYKKGADEAVK 614 >gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 555 Score = 221 bits (563), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 166/539 (30%), Positives = 273/539 (50%), Gaps = 52/539 (9%) Query: 16 LLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDFPARWRMAYVAQETPA 75 +L+++ L+ PG KIG++G NG+GKS+L ++ G +G + Y+ QE P Sbjct: 21 ILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMPNLNIGYLPQE-PQ 79 Query: 76 LD-----RPAIEYAI----DGDAHLRQLEAELARAEAQPDDKHDGNHIAELHTALADADA 126 LD R +E A+ + A L + A A AE D A L +A AD Sbjct: 80 LDAEKTVRQEVESALGEVFEAQAKLDAVYA--AYAEEDADFDALATEQARLEAIIAAADG 137 Query: 127 YTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHLDL 186 ++ + E + L + + SGG + R+ L + L+ D+LLLDEPTNHLD Sbjct: 138 NSLNQQLE--MAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDA 195 Query: 187 DAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAFERQRSAQL 246 +++ WLE +L+R+ GT++ I+HDR FLD I+ +D + GNYS++ Q+ A+L Sbjct: 196 ESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEARL 255 Query: 247 ELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAAEFSFEF 306 + +Q+ A ++ + K RQA+S+ + L++ EL +E+ ++ Sbjct: 256 KQEEASESARQKTIAKELEWV----RQNPKGRQAKSKAR-LARFNEL------SEYEYQK 304 Query: 307 RE-------PLSA--PNPLLVMEKVNAGYHIEGKNGAPDEDKIIVHGIDFSLQNGQRIGL 357 R P++ N ++ + V+ GY D++++ ++F + G +G+ Sbjct: 305 RNETQEIFIPVAERLGNEVIEFKNVSKGYG----------DRLLIDDLNFKIPAGAIVGI 354 Query: 358 LGVNGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLAP 417 +G NGAGKSTL + +AG P SG LG + + Q + ++ ++ ++ Sbjct: 355 IGPNGAGKSTLFRMLAGRETPDSGEVVLGPTVKVSLVDQSREDL--GNKKTVFEDVSGGA 412 Query: 418 DVR-----EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPT 472 D+ E R +LG FNF G + SGGE+ RL LA + Q N+LLLDEP+ Sbjct: 413 DILTVGRFEMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPS 472 Query: 473 NHLDLETREALTMALAQFEGTLVLVSHDRHLL-RATTDQFLIVAEGKLQPFDGDLDDYK 530 N LD+ET AL AL +F GT++++SHDR L R T + ++ FDG+ +Y+ Sbjct: 473 NDLDVETLRALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQEYE 531 >gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 645 Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 131/574 (22%), Positives = 217/574 (37%), Gaps = 157/574 (27%) Query: 16 LLENVDLTLNPGDKIGLIGANGAGKS----SLFAMLRGELHADQGNIDF----------- 60 +++NV+ T+ G+ + LIG +G+GK+ SL R H G + Sbjct: 48 IVKNVNFTVARGEVLALIGESGSGKTTIALSLLGYARAGCHIAGGQVRIGERQIDQMDEK 107 Query: 61 ----------------------PARWRMAYVAQETPALDRPAIEYAIDGDAHLRQLEAEL 98 PAR M V + A+++ + A + EL Sbjct: 108 ALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIES-------ALQHGVMDKASAMRKAVEL 160 Query: 99 ARAEAQPDDKHDGNHIAELHTALADADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGW 158 RA A P+ G ER SGG Sbjct: 161 FRALALPNPDKIG------------------------------------ERYPHQVSGGQ 184 Query: 159 RMRLNLAQALMCPSDLLLLDEPTNHLDLDAII----WLEDWLKRYEGTLLIISHDRDFLD 214 R+ A AL+ +L++LDEPT LD+ I ++ +K T + +SHD + Sbjct: 185 LQRVMAAMALVTGPELVILDEPTTALDVTTQIEVLRAFKNVVKELGTTAVYVSHDLAVVA 244 Query: 215 GVVNVIVHIDDRKLKRYSGNYSAFERQRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKA 274 + + I+ + D + R +G+ S Q A S+ A A Sbjct: 245 QMADRIIVLRDGAV-RETGSTS--------------------QVLHAPADSYTQCLLAAA 283 Query: 275 TKARQAQSRMKALSKMEELAPLRAAAEFSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGA 334 + A + + ++ E+ P AE A PLL + + AGY GA Sbjct: 284 SPAAR-------VVQLREILPATLPAE----------ARAPLLRISGLVAGY------GA 320 Query: 335 PDEDKI----IVHGIDFSLQNGQRIGLLGVNGAGKSTLIKTVAGEIDPLSGTARLG---- 386 PD + I+ I+ ++Q G +G++G +G+GK+TL + VAG I P G+ +L Sbjct: 321 PDRLGLPGVRILDDINLTIQRGSTVGIIGESGSGKTTLARAVAGMIAPARGSIQLDGETL 380 Query: 387 ----KGLVIGYFAQHQVEMLRHDES-------------PLWHLTRLAPDVREQELRNFLG 429 +G F + Q+ D + PL L + + L Sbjct: 381 SPTLEGRTREQFRRVQIVFQNADTALNPSHSIGRILNRPLSFYHGLKGEAMRRRTAELLD 440 Query: 430 SFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETREALTMALA- 488 T+ A SGG+K R+ LA + +P+L+L DE T+ LD A+ LA Sbjct: 441 LVQLPATVIDRLPAELSGGQKQRVNLARALAAKPDLILCDEVTSALDTVVAAAILELLAE 500 Query: 489 ---QFEGTLVLVSHDRHLLRATTDQFLIVAEGKL 519 + + + + +SHD +RA D +++ G++ Sbjct: 501 LRRELQVSYMFISHDISTVRAICDDIVVLYAGRM 534 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,002,652 Number of extensions: 89016 Number of successful extensions: 1001 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 980 Number of HSP's successfully gapped: 48 Length of query: 658 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 567 Effective length of database: 1,188,985 Effective search space: 674154495 Effective search space used: 674154495 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)