BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0127.p
         (296 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311474|ref|YP_003775566.1| adenine-specific methylase/meth...   601   e-173
gi|300313562|ref|YP_003777654.1| polypeptide chain release facto...    94   2e-20

>gi|300311474|ref|YP_003775566.1| adenine-specific
           methylase/methyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 296

 Score =  601 bits (1549), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 1   MTPNNFSTVRDLLRYAVTRFNTEQLFFGHGSSNALDEAAYLILHTLKLPLDQLDPFLDAR 60
           MTPNNFSTVRDLLRYAVTRFNTEQLFFGHGSSNALDEAAYLILHTLKLPLDQLDPFLDAR
Sbjct: 1   MTPNNFSTVRDLLRYAVTRFNTEQLFFGHGSSNALDEAAYLILHTLKLPLDQLDPFLDAR 60

Query: 61  LLPDEIAAVMRVIERRSKDRVPAAYITHEAWLGAYRFYVDERVIVPRSFIAELIPQHFSP 120
           LLPDEIAAVMRVIERRSKDRVPAAYITHEAWLGAYRFYVDERVIVPRSFIAELIPQHFSP
Sbjct: 61  LLPDEIAAVMRVIERRSKDRVPAAYITHEAWLGAYRFYVDERVIVPRSFIAELIPQHFSP 120

Query: 121 WIQDPEAIENALDLCTGSGCLPILLADAFPNAQIDAVDISADALAVARKNVDEYQLQERI 180
           WIQDPEAIENALDLCTGSGCLPILLADAFPNAQIDAVDISADALAVARKNVDEYQLQERI
Sbjct: 121 WIQDPEAIENALDLCTGSGCLPILLADAFPNAQIDAVDISADALAVARKNVDEYQLQERI 180

Query: 181 NLVESDLYTQLPLRKYDLIISNPPYVNSGSMAKLPQEYLREPQLALAGGEDGMDLVRKIV 240
           NLVESDLYTQLPLRKYDLIISNPPYVNSGSMAKLPQEYLREPQLALAGGEDGMDLVRKIV
Sbjct: 181 NLVESDLYTQLPLRKYDLIISNPPYVNSGSMAKLPQEYLREPQLALAGGEDGMDLVRKIV 240

Query: 241 AGAAERLTPEGVLVVEIGNERAFAEAAFPELELTWLTTSAGDDMVFLVTAEQLQLA 296
           AGAAERLTPEGVLVVEIGNERAFAEAAFPELELTWLTTSAGDDMVFLVTAEQLQLA
Sbjct: 241 AGAAERLTPEGVLVVEIGNERAFAEAAFPELELTWLTTSAGDDMVFLVTAEQLQLA 296


>gi|300313562|ref|YP_003777654.1| polypeptide chain release factors
           methylase [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 101/196 (51%), Gaps = 23/196 (11%)

Query: 82  PAAYITHEAWLGAYRFYVDERVIVPR-------SFIAELIPQHFSPWIQDPEAIENALDL 134
           P AYI  +         V   V++PR           E +PQ  S           ALD+
Sbjct: 69  PIAYIVGQREFYGLDLRVSPDVLIPRPDTELLVELALERLPQGGS-----------ALDM 117

Query: 135 CTGSGCLPILLADAFPNAQIDAVDISADALAVARKNVDEYQLQERINLVESDLYTQLPL- 193
            TGSG + + +A   P+AQ+ A+D S  ALA+AR+N   +Q+  R+ L+ESD Y  L   
Sbjct: 118 GTGSGAIAVAIAHTRPDAQVTALDASPAALAIARENASTHQV--RVRLLESDWYGALDAD 175

Query: 194 RKYDLIISNPPYVNSGSMAKLPQEYLR-EPQLALAGGEDGMDLVRKIVAGAAERLTPEGV 252
           + +DLI+SNPPY+ +G +  L Q  LR EP  AL    DG+  +R I+ GA   L   G 
Sbjct: 176 QAFDLIVSNPPYIVAGDI-HLSQGDLRFEPVDALTDHADGLSDLRTIIEGAPAHLKAGGW 234

Query: 253 LVVEIGNERAFAEAAF 268
           L++E G ++A A  A 
Sbjct: 235 LLMEHGYDQAAAVRAL 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 913,852
Number of extensions: 38237
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,217,395
Effective search space: 256870345
Effective search space used: 256870345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)