BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0122.p (606 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis tra... 1019 0.0 gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis tra... 461 e-131 gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 460 e-130 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 365 e-102 gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 355 5e-99 >gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/608 (97%), Positives = 593/608 (97%), Gaps = 7/608 (1%) Query: 1 MKSLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYVVDV 60 MKSLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYV DV Sbjct: 1 MKSLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYVADV 60 Query: 61 AAGRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEG 120 AAGRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEG Sbjct: 61 AAGRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEG 120 Query: 121 KAYYVEMMKVGQEKQHGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQ 180 KAYYVEMMKVGQEKQHGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQ Sbjct: 121 KAYYVEMMKVGQEKQHGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQ 180 Query: 181 AQFRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQ 240 AQFRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQ Sbjct: 181 AQFRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQ 240 Query: 241 TRPGDTRSLLYAMATMRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLA 300 TRPGDTRSLLYAMATMRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLA Sbjct: 241 TRPGDTRSLLYAMATMRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLA 300 Query: 301 TTASNMDGLTATVKQNADNARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIAD 360 TTASNMDGLTATVKQNADNARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIAD Sbjct: 301 TTASNMDGLTATVKQNADNARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIAD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIED 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIED Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIED 420 Query: 421 SVQRVGSGSDQVARAGQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQV 480 SVQRVGSGSDQVARAGQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQV Sbjct: 421 SVQRVGSGSDQVARAGQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQV 480 Query: 481 TQQNAAQQNAALVEQAAAAAGSLEEQARRLKAAVSTFRVDGEENLSAPVASAL--DAATA 538 TQQNAA AAAAAGSLEEQARRLKAAVSTFRVDGEENLSAPVAS+L ATA Sbjct: 481 TQQNAALVEQ-----AAAAAGSLEEQARRLKAAVSTFRVDGEENLSAPVASSLATATATA 535 Query: 539 TATAVRKAPAAAAIPVASAKPLAGKPLTKPAGGAAPLPAPAKAAPAAAKPASAAKALPAG 598 T TAVRKAPAAAAIPVASAKPLAGKPLTKPAGGAAPLPAPAKAAPAAAKPASAAKALPAG Sbjct: 536 TPTAVRKAPAAAAIPVASAKPLAGKPLTKPAGGAAPLPAPAKAAPAAAKPASAAKALPAG 595 Query: 599 DDGDWETF 606 DDGDWETF Sbjct: 596 DDGDWETF 603 >gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 461 bits (1186), Expect = e-131, Method: Compositional matrix adjust. Identities = 248/483 (51%), Positives = 329/483 (68%), Gaps = 3/483 (0%) Query: 3 SLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYVVDVAA 62 SLK +L LV W LL L+ W A+ R+ I ER+ GL+ V E A + Y + Sbjct: 5 SLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAKLESD 64 Query: 63 GRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEGKA 122 G++S+E+AQK A+ RI RY GD Y+ + D+ V++M P N + G+N+ D KD++G Sbjct: 65 GKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDAKGNE 124 Query: 123 YYVEMMKVGQEKQ-HGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQA 181 Y + G G+++Y PG+D +PKM +V + W+W ++ V+ D+QA Sbjct: 125 LYKMIAATGSSGAGKGYLEYWWPRPGSDQP--SPKMGFVKRFKPWNWDLICSVYSDDIQA 182 Query: 182 QFRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQT 241 FR L + + +L+ +GV++S++ + R I S+GGEP A ++A +IA GDLT + T Sbjct: 183 DFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVIHT 242 Query: 242 RPGDTRSLLYAMATMRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLAT 301 GD SL+ A+A R+RL + GI+Q T++I EIA GN+DLS+RTE+QAGSL Sbjct: 243 TQGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSLEE 302 Query: 302 TASNMDGLTATVKQNADNARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIADI 361 TAS M+ LTATVKQNA NA+ A QLA A+ +A +GGEVVGQVVQTME I SSRKI DI Sbjct: 303 TASTMEELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIVDI 362 Query: 362 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDS 421 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+DS Sbjct: 363 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDDS 422 Query: 422 VQRVGSGSDQVARAGQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQVT 481 V +V +G+ V RAGQTM EVV++++ ++ +V EI+ AS EQ +GIEQV AI +MD+ T Sbjct: 423 VGKVDAGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDETT 482 Query: 482 QQN 484 QQN Sbjct: 483 QQN 485 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 460 bits (1183), Expect = e-130, Method: Compositional matrix adjust. Identities = 289/640 (45%), Positives = 371/640 (57%), Gaps = 71/640 (11%) Query: 3 SLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYVVDVAA 62 S +L LV+ LL ++ +SA R ++ERK L + + A +VK Y + Sbjct: 5 SFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGALADS 64 Query: 63 GRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEGKA 122 G +SKE+AQK A + I ++RY D Y I S +++M P + GK++++ KD G Sbjct: 65 GALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDPAGNN 124 Query: 123 YYVEMMKVGQEKQHGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQAQ 182 +VE+ K G + + GFV Y+ P + PK S+V+ + WDW + TG ++ D+ A Sbjct: 125 LFVEITKAGSKPEGGFVHYL--WPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDINAA 182 Query: 183 FRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQTR 242 F L+++ + V + +++ I I ++GG+PA A ++A RIA GDLT ++T Sbjct: 183 FLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQGDLTPNIETA 242 Query: 243 PGDTRSLLYAMATMRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLATT 302 PGD+ SLLYA+ +MR+ L I I+ I ++EIA+GNLDLS RTE+QAGS+ T Sbjct: 243 PGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIEET 302 Query: 303 ASNMDGLTATVKQNADNARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIADII 362 AS M+ LTATVKQNADNARQA QLA SAS++A +GG VV QVVQTMEGIT SSRKIADII Sbjct: 303 ASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIADII 362 Query: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDSV 422 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+DSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSV 422 Query: 423 QRVGSGSDQVARAGQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQVTQ 482 +V +GS V +AG TM EVVA+VR +TDIVGEIS+AS+EQ GI +V AI +MD+ TQ Sbjct: 423 AKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQ 482 Query: 483 QNAAQQNAALVEQAAAAAGSLEEQARRLKAAVSTFRVDGEENLSAPVASALDAATATATA 542 QNAA A + QA L V F VDG + AP A Sbjct: 483 QNAALVEQAAAAAQSLQD-----QAATLAGLVGRFHVDGSQASIAPTA------------ 525 Query: 543 VRKAPAAAAIPVASAKPLAGKPLTKPAGGAAPLPAPA----------------------- 579 P A KP T+P P PA Sbjct: 526 ----------------PQAAKPATRPVQPTTPPATPALRKPAAPQPARPALAASKAAAPK 569 Query: 580 ------------KAAPAAAKPASAAKALPAG-DDGDWETF 606 APAA + LPAG D+GDWETF Sbjct: 570 AAPKTAAAQPAKAEAPAAKPTGKSPSRLPAGEDEGDWETF 609 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 365 bits (937), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/324 (62%), Positives = 247/324 (76%), Gaps = 6/324 (1%) Query: 201 VSVMMLAIIRR-ITGSLGGEPAYAVDIATRIANGDLTVQVQTRPGDTRSLLYAMATMRER 259 +S+++ ++ R + LGGEP YA IA +IA+GDLT VQT+ GD SLL+A+ MR+ Sbjct: 198 ISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDS 257 Query: 260 LAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLATTASNMDGLTATVKQNADN 319 L ++ +RQGT I+ + EIA+GNLDLSSRTE+QA SL TAS M+ L TVKQNADN Sbjct: 258 LVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADN 317 Query: 320 ARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIADIIGVIDGIAFQTNILALNA 379 A+QA QLA SAS++A++GGEVV QVV TM+GI SSRKI DII VIDGIAFQTNILALNA Sbjct: 318 AKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNA 377 Query: 380 AVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDSVQRVGSGSDQVARAGQTM 439 AVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEI LI DSV ++ GS V +AGQTM Sbjct: 378 AVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTM 437 Query: 440 GEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQVTQQNAAQQNAALVEQAAAA 499 VV +V+ +TD+V EIS AS+EQ +GI QVN AI MD+ T QQN+ALVE+AAAA Sbjct: 438 ENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEAT-----QQNSALVEEAAAA 492 Query: 500 AGSLEEQARRLKAAVSTFRVDGEE 523 A S++EQA L V+TFR+D ++ Sbjct: 493 ANSMKEQAGALSGLVATFRLDAQQ 516 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 355 bits (911), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 207/324 (63%), Positives = 251/324 (77%), Gaps = 5/324 (1%) Query: 196 VVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQTRPGDTRSLLYAMAT 255 +V V+ +++ I R + LGGEPAYA DIA +IA+GDLT V +PGDT SLL+A+ Sbjct: 204 IVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADVDAKPGDTTSLLFAIKK 263 Query: 256 MRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLATTASNMDGLTATVKQ 315 MR+ LA ++ +R+GT AI+ + EIA GN+DLSSRTE+QAG+L TAS M+ L +TVKQ Sbjct: 264 MRDNLAAIVGKVREGTHAIEQASAEIATGNMDLSSRTEQQAGALEETASAMEELMSTVKQ 323 Query: 316 NADNARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIADIIGVIDGIAFQTNIL 375 NADNARQA QLA SASD+A++GG+VVGQVV TMEGI SSRKI DII VIDGIAFQTNIL Sbjct: 324 NADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVDIISVIDGIAFQTNIL 383 Query: 376 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDSVQRVGSGSDQVARA 435 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEI LI DSV ++ GS V +A Sbjct: 384 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLINDSVGQIEQGSSLVGQA 443 Query: 436 GQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQVTQQNAAQQNAALVEQ 495 G TM VV +V+ +TD+V EIS AS+EQ +GI QVNLAI MD+ T QQN+ALVE+ Sbjct: 444 GATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEAT-----QQNSALVEE 498 Query: 496 AAAAAGSLEEQARRLKAAVSTFRV 519 AAAAA S++ QA +L VSTF++ Sbjct: 499 AAAAANSMKTQAEQLAGLVSTFKL 522 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.128 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,203,288 Number of extensions: 42800 Number of successful extensions: 497 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 292 Number of HSP's successfully gapped: 72 Length of query: 606 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 515 Effective length of database: 1,188,985 Effective search space: 612327275 Effective search space used: 612327275 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)