BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0121.p (1148 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPa... 2315 0.0 >gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPase [Herbaspirillum seropedicae SmR1] Length = 1176 Score = 2315 bits (6000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1146/1148 (99%), Positives = 1146/1148 (99%) Query: 1 VVGPNGCGKSNIIDAVRWVLGESKASELRGESMQDVIFNGSTHRKPAGRASVELVFDNSA 60 VVGPNGCGKSNIIDAVRWVLGESKASELRGESMQDVIFNGSTHRKPAGRASVELVFDNSA Sbjct: 29 VVGPNGCGKSNIIDAVRWVLGESKASELRGESMQDVIFNGSTHRKPAGRASVELVFDNSA 88 Query: 61 GKAAGQWGQYAEIAVKRTLTRDGTSSYYINNQSVRRRDIQDIFLGTGLGPRAYAIIGQGM 120 GKAAGQWGQYAEIAVKRTLTRDGTSSYYINNQSVRRRDIQDIFLGTGLGPRAYAIIGQGM Sbjct: 89 GKAAGQWGQYAEIAVKRTLTRDGTSSYYINNQSVRRRDIQDIFLGTGLGPRAYAIIGQGM 148 Query: 121 ISRIIEARPEELRIFLEEAAGVSKYKERRRETENRLHDTTENLTRLEDILRELNTNLEKL 180 ISRIIEARPEELRIFLEEAAGVSKYKERRRETENRLHDTTENLTRLEDILRELNTNLEKL Sbjct: 149 ISRIIEARPEELRIFLEEAAGVSKYKERRRETENRLHDTTENLTRLEDILRELNTNLEKL 208 Query: 181 EAQAAVAKKFHELQNDQEEKQKLLWLLRKNEAKAEQERFFKEIERAQIDLEEQTAKLRHV 240 EAQAAVAKKFHELQNDQEEKQKLLWLLRKNEAKAEQERFFKEIERAQIDLEEQTAKLRHV Sbjct: 209 EAQAAVAKKFHELQNDQEEKQKLLWLLRKNEAKAEQERFFKEIERAQIDLEEQTAKLRHV 268 Query: 241 ETELEHMRQAHYAAGDRLHQAQGHLYQTNSEIGSLEAQIKFVIESRNRLQAQLNSLGAQR 300 ETELEHMRQAHYAAGDRLHQAQGHLYQTNSEIGSLEAQIKFVIESRNRLQAQLNSLGAQR Sbjct: 269 ETELEHMRQAHYAAGDRLHQAQGHLYQTNSEIGSLEAQIKFVIESRNRLQAQLNSLGAQR 328 Query: 301 DQWQRQGTQQQEELAEAEIQLEEFGMRVEQAQHAVQDTSDRLPSLEAAWRESQVKTTESR 360 DQWQRQGTQQQEELAEAEIQLEEFGMRVEQAQHAVQDTSDRLPSLEAAWRESQVKTTESR Sbjct: 329 DQWQRQGTQQQEELAEAEIQLEEFGMRVEQAQHAVQDTSDRLPSLEAAWRESQVKTTESR 388 Query: 361 GKIMQVQQQIELQSTHQRNASNILSGLAARRERLMQEKNGMAMPDEVHLSNLRMQLEEKQ 420 GKIMQVQQQIELQSTHQRNASNILSGLAARRERLMQEKNGMAMPDEVHLSNLRMQLEEKQ Sbjct: 389 GKIMQVQQQIELQSTHQRNASNILSGLAARRERLMQEKNGMAMPDEVHLSNLRMQLEEKQ 448 Query: 421 ASLEEASMYLEEAQEQLPRLEEERRTAQELVSKETSANAQLEARLTALKQLQESVQAQGK 480 ASLEEASMYLEEAQEQLPRLEEERRTAQELVSKETSANAQLEARLTALKQLQESVQAQGK Sbjct: 449 ASLEEASMYLEEAQEQLPRLEEERRTAQELVSKETSANAQLEARLTALKQLQESVQAQGK 508 Query: 481 VQPWLEKHGLAELPRLWQKLHIESGWETALEAVLRERMSALEMSNLDWAKAFFSDAPPAK 540 VQPWLEKHGLAELPRLWQKLHIESGWETALEAVLRERMSALEMSNLDWAKAFFSDAPPAK Sbjct: 509 VQPWLEKHGLAELPRLWQKLHIESGWETALEAVLRERMSALEMSNLDWAKAFFSDAPPAK 568 Query: 541 LALYAPNAGLAQPEAQPVAGLKPFVMLLQLNDPGLRALMNDWLNHIYIADDTATAFAERA 600 LALYAPNAGLAQPEAQPVAGLKPFV LLQLNDPGLRALMNDWLNHIYIADDTATAFAERA Sbjct: 569 LALYAPNAGLAQPEAQPVAGLKPFVTLLQLNDPGLRALMNDWLNHIYIADDTATAFAERA 628 Query: 601 KLPLGGLFVTRQGHVVSNSSVRFYASDSEQDGMLARQQEIENITKQQRAQAMLAEEAKGR 660 KLPLGGLFVTRQGHVVSNSSVRFYASDSEQDGMLARQQEIENITKQQRAQAMLAEEAKGR Sbjct: 629 KLPLGGLFVTRQGHVVSNSSVRFYASDSEQDGMLARQQEIENITKQQRAQAMLAEEAKGR 688 Query: 661 AVRAEAALSAASQRLQELRQRVNSLTQSAHSLQIEVMKLAEVQERFNQRSTQIATDLEEI 720 AVRAEAAL AASQRLQELRQRVNSLTQSAHSLQIEVMKLAEVQERFNQRSTQIATDLEEI Sbjct: 689 AVRAEAALLAASQRLQELRQRVNSLTQSAHSLQIEVMKLAEVQERFNQRSTQIATDLEEI 748 Query: 721 SMQEAEQQQVQAESEARFEELDIELAELQEQHENGQTDYLNKEQQLNDARTRLRELERAA 780 SMQEAEQQQVQAESEARFEELDIELAELQEQHENGQTDYLNKEQQLNDARTRLRELERAA Sbjct: 749 SMQEAEQQQVQAESEARFEELDIELAELQEQHENGQTDYLNKEQQLNDARTRLRELERAA 808 Query: 781 QETEFAEKSHRNKIEELKRGIATALEQAAQLFASMQQGSLELESLDDQAAQAGLQELLDR 840 QETEFAEKSHRNKIEELKRGIATALEQAAQLFASMQQGSLELESLDDQAAQAGLQELLDR Sbjct: 809 QETEFAEKSHRNKIEELKRGIATALEQAAQLFASMQQGSLELESLDDQAAQAGLQELLDR 868 Query: 841 RSEQERALADARHELDQLSQQLRSHEESRMQAERSLQPQRDRITELQLKEQAARLNQEQF 900 RSEQERALADARHELDQLSQQLRSHEESRMQAERSLQPQRDRITELQLKEQAARLNQEQF Sbjct: 869 RSEQERALADARHELDQLSQQLRSHEESRMQAERSLQPQRDRITELQLKEQAARLNQEQF 928 Query: 901 SEALAQTQADEAALSEKLTSDMRPSYLQGEVTRLTNAIAALGAVNLAALDELATASERKH 960 SEALAQTQADEAALSEKLTSDMRPSYLQGEVTRLTNAIAALGAVNLAALDELATASERKH Sbjct: 929 SEALAQTQADEAALSEKLTSDMRPSYLQGEVTRLTNAIAALGAVNLAALDELATASERKH 988 Query: 961 FLDAQHADLNEAITTLQDAIHKIDMETRDLLQDTFDKVNRHFSELFPVLFGGGQAKLIMT 1020 FLDAQHADLNEAITTLQDAIHKIDMETRDLLQDTFDKVNRHFSELFPVLFGGGQAKLIMT Sbjct: 989 FLDAQHADLNEAITTLQDAIHKIDMETRDLLQDTFDKVNRHFSELFPVLFGGGQAKLIMT 1048 Query: 1021 GDEILDSGVQVMAQPPGKKNATIHLLSGGEKALTATALVFSMFQLNPAPFCLLDEVDAPL 1080 GDEILDSGVQVMAQPPGKKNATIHLLSGGEKALTATALVFSMFQLNPAPFCLLDEVDAPL Sbjct: 1049 GDEILDSGVQVMAQPPGKKNATIHLLSGGEKALTATALVFSMFQLNPAPFCLLDEVDAPL 1108 Query: 1081 DDANTERFANMVKRMSDHTQFLFISHNKIAMEMAQQLIGVTMQEQGVSRIVAVDMESAAN 1140 DDANTERFANMVKRMSDHTQFLFISHNKIAMEMAQQLIGVTMQEQGVSRIVAVDMESAAN Sbjct: 1109 DDANTERFANMVKRMSDHTQFLFISHNKIAMEMAQQLIGVTMQEQGVSRIVAVDMESAAN 1168 Query: 1141 FSSAEQAA 1148 FSSAEQAA Sbjct: 1169 FSSAEQAA 1176 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.126 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,867,638 Number of extensions: 107615 Number of successful extensions: 726 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 722 Number of HSP's successfully gapped: 1 Length of query: 1148 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1052 Effective length of database: 1,165,310 Effective search space: 1225906120 Effective search space used: 1225906120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 136 (57.0 bits)