BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0118.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate uridyly...   604   e-174
gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate uridyly...   411   e-116

>gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  604 bits (1557), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 1   MIKKIKKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIHYAVEEAVAAGITEMVFITGR 60
           MIKKIKKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIHYAVEEAVAAGITEMVFITGR
Sbjct: 2   MIKKIKKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIHYAVEEAVAAGITEMVFITGR 61

Query: 61  NKRAIEDHFDKAYELESELEAAGKKKLLEIVQNVVPKSVNCIFIRQSVPLGLGHAVLCAR 120
           NKRAIEDHFDKAYELESELEAAGKKKLLEIVQNVVPKSVNCIFIRQSVPLGLGHAVLCAR
Sbjct: 62  NKRAIEDHFDKAYELESELEAAGKKKLLEIVQNVVPKSVNCIFIRQSVPLGLGHAVLCAR 121

Query: 121 PVVGEEPFAVLLADDFMDTDAGVKPVLAQMTEIYEREGMSMLAVQEVPQSDTKQYGIVSA 180
           PVVGEEPFAVLLADDFMDTDAGVKPVLAQMTEIYEREGMSMLAVQEVPQSDTKQYGIVSA
Sbjct: 122 PVVGEEPFAVLLADDFMDTDAGVKPVLAQMTEIYEREGMSMLAVQEVPQSDTKQYGIVSA 181

Query: 181 TPYQPNLERVNAIVEKPAPEEAPSTLAVVGRYVLNNRIFDYLENIGRGAGGEIQLTDGIA 240
           TPYQPNLERVNAIVEKPAPEEAPSTLAVVGRYVLNNRIFDYLENIGRGAGGEIQLTDGIA
Sbjct: 182 TPYQPNLERVNAIVEKPAPEEAPSTLAVVGRYVLNNRIFDYLENIGRGAGGEIQLTDGIA 241

Query: 241 KLMQAESVLAYRYQGQRYDCGSKLGYLKATVAMGMKHPETGAAFSEFLKDVAGKQA 296
           KLMQAESVLAYRYQGQRYDCGSKLGYLKATVAMGMKHPETGAAFSEFLKDVAGKQA
Sbjct: 242 KLMQAESVLAYRYQGQRYDCGSKLGYLKATVAMGMKHPETGAAFSEFLKDVAGKQA 297


>gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  411 bits (1056), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/266 (73%), Positives = 229/266 (86%)

Query: 30  MLPIVDKPLIHYAVEEAVAAGITEMVFITGRNKRAIEDHFDKAYELESELEAAGKKKLLE 89
           MLPIVDKPLI YAVEEAV AGITEM+FITGRNKRAIEDHFDKAYELESELEAAGK KLLE
Sbjct: 1   MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE 60

Query: 90  IVQNVVPKSVNCIFIRQSVPLGLGHAVLCARPVVGEEPFAVLLADDFMDTDAGVKPVLAQ 149
            +++VVPK +NC+++RQ+ PLGLGHAVL A+P+VG+EPFAVLLADDFMD DAG K V+AQ
Sbjct: 61  TIRHVVPKHINCVYVRQAEPLGLGHAVLLAKPLVGDEPFAVLLADDFMDVDAGQKNVMAQ 120

Query: 150 MTEIYEREGMSMLAVQEVPQSDTKQYGIVSATPYQPNLERVNAIVEKPAPEEAPSTLAVV 209
           MT ++EREG S+LAVQ+VP+ +T+QYGIVS + Y   LE ++ IVEKPAPEEAPSTLAVV
Sbjct: 121 MTAMFEREGKSLLAVQDVPRPETRQYGIVSGSAYADRLELMSGIVEKPAPEEAPSTLAVV 180

Query: 210 GRYVLNNRIFDYLENIGRGAGGEIQLTDGIAKLMQAESVLAYRYQGQRYDCGSKLGYLKA 269
           GRYVL   IF+ LENIG GAGGEIQLTD I+ L+Q E +LAYRY+GQR+DCGSKLGYLKA
Sbjct: 181 GRYVLTPAIFERLENIGTGAGGEIQLTDAISALLQQEQILAYRYEGQRFDCGSKLGYLKA 240

Query: 270 TVAMGMKHPETGAAFSEFLKDVAGKQ 295
            VAMG KH E G+ F++FL+D A + 
Sbjct: 241 AVAMGFKHKEVGSGFAQFLQDFAAQH 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 937,206
Number of extensions: 39730
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 2
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)