BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0116.p (857 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbasp... 1728 0.0 gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbasp... 529 e-151 >gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1] Length = 857 Score = 1728 bits (4475), Expect = 0.0, Method: Compositional matrix adjust. Identities = 856/857 (99%), Positives = 856/857 (99%) Query: 1 MDVSRIRALRGPNLWSRHTAIEAIVSCPEDERVIDNMPGFELRLRARFPQIGFLEPDGGK 60 MDVSRIRALRGPNLWSRHTAIEAIVSCPEDERVIDNMPGFELRLRARFPQIGFLEPDGGK Sbjct: 1 MDVSRIRALRGPNLWSRHTAIEAIVSCPEDERVIDNMPGFELRLRARFPQIGFLEPDGGK 60 Query: 61 QVVSLAHALAAAALGLQSQAGCPVTFSRTVSTVETGIYQVVVEYSEEEVGRLAFDLALEL 120 QVVSLAHALAAAALGLQSQAGCPVTFSRTVSTVETGIYQVVVEYSEEEVGRLAFDLALEL Sbjct: 61 QVVSLAHALAAAALGLQSQAGCPVTFSRTVSTVETGIYQVVVEYSEEEVGRLAFDLALEL 120 Query: 121 VRAAQADAPFDLTAALTRIRELDEDVRLGPSTGSIVNAAIKRGIPFRRLTQGSMVQFGWG 180 VRAAQADAPFDLTA LTRIRELDEDVRLGPSTGSIVNAAIKRGIPFRRLTQGSMVQFGWG Sbjct: 121 VRAAQADAPFDLTATLTRIRELDEDVRLGPSTGSIVNAAIKRGIPFRRLTQGSMVQFGWG 180 Query: 181 SRQKRIQAAETSNTSAIAESIAQDKDLTKMLLHAAGVPVPNGRVVETVEDALKAAEEIGS 240 SRQKRIQAAETSNTSAIAESIAQDKDLTKMLLHAAGVPVPNGRVVETVEDALKAAEEIGS Sbjct: 181 SRQKRIQAAETSNTSAIAESIAQDKDLTKMLLHAAGVPVPNGRVVETVEDALKAAEEIGS 240 Query: 241 AVVIKPLDGNQGKGVAVNISTPEQITRAFNNAALISDEVIVERYLPGHDFRLLVIGKTLV 300 AVVIKPLDGNQGKGVAVNISTPEQITRAFNNAALISDEVIVERYLPGHDFRLLVIGKTLV Sbjct: 241 AVVIKPLDGNQGKGVAVNISTPEQITRAFNNAALISDEVIVERYLPGHDFRLLVIGKTLV 300 Query: 301 AAARRDPPQVIGDGVHTIRQLIDQVNADPLRGDGHATSLTKIRLDDIALSVLSGQNLDPE 360 AAARRDPPQVIGDGVHTIRQLIDQVNADPLRGDGHATSLTKIRLDDIALSVLSGQNLDPE Sbjct: 301 AAARRDPPQVIGDGVHTIRQLIDQVNADPLRGDGHATSLTKIRLDDIALSVLSGQNLDPE 360 Query: 361 AIPAQGVRVVLRNNANLSTGGTATDVTDDVHPDVAARAIAAAQMVGLDICGVDVVCNSVH 420 AIPAQGVRVVLRNNANLSTGGTATDVTDDVHPDVAARAIAAAQMVGLDICGVDVVCNSVH Sbjct: 361 AIPAQGVRVVLRNNANLSTGGTATDVTDDVHPDVAARAIAAAQMVGLDICGVDVVCNSVH 420 Query: 421 MSLEEQGGGIVEVNAAPGLRMHLSPSYGKARDVGEAIVSTMYEDGDDGRIPVVAVAGTNG 480 MSLEEQGGGIVEVNAAPGLRMHLSPSYGKARDVGEAIVSTMYEDGDDGRIPVVAVAGTNG Sbjct: 421 MSLEEQGGGIVEVNAAPGLRMHLSPSYGKARDVGEAIVSTMYEDGDDGRIPVVAVAGTNG 480 Query: 481 KTTTVRLITHLLAKTGLRVGMTNTDGVYIDGQRTDTGDCSGPRSARNVLFHPDVDAAVLE 540 KTTTVRLITHLLAKTGLRVGMTNTDGVYIDGQRTDTGDCSGPRSARNVLFHPDVDAAVLE Sbjct: 481 KTTTVRLITHLLAKTGLRVGMTNTDGVYIDGQRTDTGDCSGPRSARNVLFHPDVDAAVLE 540 Query: 541 TARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLAVVKRVIVENVAPTGTAVL 600 TARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLAVVKRVIVENVAPTGTAVL Sbjct: 541 TARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLAVVKRVIVENVAPTGTAVL 600 Query: 601 NAADPMVAKMAASCPGAVTFFALDPTHPIMATHRAQGHRIVYRDGDAIVAAQGSFEKRLK 660 NAADPMVAKMAASCPGAVTFFALDPTHPIMATHRAQGHRIVYRDGDAIVAAQGSFEKRLK Sbjct: 601 NAADPMVAKMAASCPGAVTFFALDPTHPIMATHRAQGHRIVYRDGDAIVAAQGSFEKRLK 660 Query: 661 LSGIPLTRAGAIGFQVENVMASVGAAWALNLDWEQITGALASFISDSGTAPGRFNLFDYK 720 LSGIPLTRAGAIGFQVENVMASVGAAWALNLDWEQITGALASFISDSGTAPGRFNLFDYK Sbjct: 661 LSGIPLTRAGAIGFQVENVMASVGAAWALNLDWEQITGALASFISDSGTAPGRFNLFDYK 720 Query: 721 GATLIADYGHNPDAIQALIKAVDSMPAKRRSVVISGAGDRRDVDITRQTELLGDAFDEVV 780 GATLIADYGHNPDAIQALIKAVDSMPAKRRSVVISGAGDRRDVDITRQTELLGDAFDEVV Sbjct: 721 GATLIADYGHNPDAIQALIKAVDSMPAKRRSVVISGAGDRRDVDITRQTELLGDAFDEVV 780 Query: 781 LYQDQCQRGREDGEVIALLRQGLSKASRTSDVKEINGEFLAIDTALGSLQPGDLCLILID 840 LYQDQCQRGREDGEVIALLRQGLSKASRTSDVKEINGEFLAIDTALGSLQPGDLCLILID Sbjct: 781 LYQDQCQRGREDGEVIALLRQGLSKASRTSDVKEINGEFLAIDTALGSLQPGDLCLILID 840 Query: 841 QVEEALAHIDTRVKESS 857 QVEEALAHIDTRVKESS Sbjct: 841 QVEEALAHIDTRVKESS 857 >gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1] Length = 732 Score = 529 bits (1363), Expect = e-151, Method: Compositional matrix adjust. Identities = 313/719 (43%), Positives = 435/719 (60%), Gaps = 23/719 (3%) Query: 1 MDVSRIRALRGPNLWSRHTAIEAIVSCPEDERVIDN-MPGFELRLRARFPQI----GFLE 55 ++ R L+GPN+W+ +A+E + E E N +PGF RL P + E Sbjct: 4 IEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIPGFPDRLTTWLPTLIEHRCSYE 63 Query: 56 PDGG-----KQVVSLAHALAAAALGLQSQAGCPVTFSRTVSTVETGIYQVVVEYSEEEVG 110 GG + H L L LQ+ AG P F + T G+Y+VVV E V Sbjct: 64 ERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHETVT 123 Query: 111 RLAFDLALELVRAAQADAPFDLTAALTRIRELDEDVRLGPSTGSIVNAAIKRGIPFRRLT 170 R A A +LV AA D P+DL A L+++R + + + LGPST IV+AA +R IP RL+ Sbjct: 124 RAALYAARDLVMAAIEDRPYDLDATLSKLRRMVDRLCLGPSTACIVDAADERRIPTIRLS 183 Query: 171 QGSMVQFGWGSRQKRIQAAETSNTSAIAESIAQDKDLTKMLLHAAGVPVPNGRVVETVED 230 +G++VQ G G + +RI AE+ TSAIAE I++DKDLTK LL GVPVP GR+VE+ ED Sbjct: 184 EGNLVQLGHGCKSRRIWTAESDQTSAIAEGISRDKDLTKSLLETCGVPVPEGRLVESPED 243 Query: 231 ALKAAEEIGSAVVIKPLDGNQGKGVAVNISTPEQITRAFNNAALISDEVIVERYLPGHDF 290 A +AA++IG VV+KP D N G+GV ++++T E+I A+ A V+VER++PG + Sbjct: 244 AWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAYKVALEEGSGVLVERFVPGLEH 303 Query: 291 RLLVIGKTLVAAARRDPPQVIGDGVHTIRQLIDQVNADPLRG--DGHATSLTKIRLDDIA 348 RLL++G L AAAR +P ++GDG T++ L+D++N DP RG + H + + A Sbjct: 304 RLLIVGGKLAAAARGEPIFIVGDGKSTVQDLLDELNRDPRRGLLEEHLLDPVLLEREPAA 363 Query: 349 LSVLSGQNLDPEAIPAQGVRVVLRNNANLSTGGTATDVTDDVHPDVAARAIAAAQMVGLD 408 + L QNL E++PA G R++L N N+S +D+TD VHP VAA A AA++VGLD Sbjct: 364 VLELQRQNLTTESVPAAGRRILLLRNGNVS-----SDITDLVHPSVAAAASLAARIVGLD 418 Query: 409 ICGVDVVCNSVHMSLEEQGGGIVEVNAAPGLRMHLSPSYGKARDVGEAIVSTMYEDGDDG 468 I GVD+V + L++QGG IVEVNA PGL MHL PS GK R VGEAI+ ++ ++G Sbjct: 419 IAGVDIVAEDISRPLQDQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEENG 478 Query: 469 RIPVVAVAGTNGKTTTVRLITHLLAKTGLRVGMTNTDGVYIDGQRTDTGDCSGPRSARNV 528 RIP+V V GT+GKTT RLI ++ +G VG+ +G+Y ++ + G+ + +A V Sbjct: 479 RIPIVGVTGTHGKTTIARLIARIVHLSGKHVGLACGEGLYFGERQIERGNRANWDAAHRV 538 Query: 529 LFHPDVDAAVLETARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLAV-VKRV 587 L + V+AAV E +L EGL +DRC V VV NI D L YI E +A VKR Sbjct: 539 LLNRAVEAAVFENGSAAILAEGLAYDRCLVGVVANIDPNDSLPEFYIENAEQIATKVKRT 598 Query: 588 IVENVAPTGTAVLNAADPMVAKMAASCPGAVTFFALDPTHPIMATHRAQGHRIVYRDGDA 647 V+ V P G AVLNA DP+VA MA C G V FF+ DP ++A+H +G R V+ G Sbjct: 599 QVDLVLPDGAAVLNADDPLVADMAQLCDGEVIFFSTDPASELVASHLKEGGRAVFLRGGD 658 Query: 648 IVAAQGSFEKRLKLS---GIPLTRAGAIGFQVENVMASVGAAWALNLDWEQITGALASF 703 ++ A+G E++ K+S IPLT GA+ +QVENV+A+VGAAWAL + E I + F Sbjct: 659 LIQAEG--ERQCKVSSVDAIPLTENGAVAYQVENVLAAVGAAWALGISPEVIRAGIELF 715 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,584,252 Number of extensions: 110990 Number of successful extensions: 409 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 402 Number of HSP's successfully gapped: 2 Length of query: 857 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 764 Effective length of database: 1,179,515 Effective search space: 901149460 Effective search space used: 901149460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)