BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0115.p (732 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbasp... 1471 0.0 gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbasp... 513 e-146 >gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1] Length = 732 Score = 1471 bits (3809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 732/732 (100%), Positives = 732/732 (100%) Query: 1 MKNIEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIPGFPDRLTTWLPTLIEHRC 60 MKNIEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIPGFPDRLTTWLPTLIEHRC Sbjct: 1 MKNIEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIPGFPDRLTTWLPTLIEHRC 60 Query: 61 SYEERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHE 120 SYEERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHE Sbjct: 61 SYEERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHE 120 Query: 121 TVTRAALYAARDLVMAAIEDRPYDLDATLSKLRRMVDRLCLGPSTACIVDAADERRIPTI 180 TVTRAALYAARDLVMAAIEDRPYDLDATLSKLRRMVDRLCLGPSTACIVDAADERRIPTI Sbjct: 121 TVTRAALYAARDLVMAAIEDRPYDLDATLSKLRRMVDRLCLGPSTACIVDAADERRIPTI 180 Query: 181 RLSEGNLVQLGHGCKSRRIWTAESDQTSAIAEGISRDKDLTKSLLETCGVPVPEGRLVES 240 RLSEGNLVQLGHGCKSRRIWTAESDQTSAIAEGISRDKDLTKSLLETCGVPVPEGRLVES Sbjct: 181 RLSEGNLVQLGHGCKSRRIWTAESDQTSAIAEGISRDKDLTKSLLETCGVPVPEGRLVES 240 Query: 241 PEDAWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAYKVALEEGSGVLVERFVPG 300 PEDAWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAYKVALEEGSGVLVERFVPG Sbjct: 241 PEDAWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAYKVALEEGSGVLVERFVPG 300 Query: 301 LEHRLLIVGGKLAAAARGEPIFIVGDGKSTVQDLLDELNRDPRRGLLEEHLLDPVLLERE 360 LEHRLLIVGGKLAAAARGEPIFIVGDGKSTVQDLLDELNRDPRRGLLEEHLLDPVLLERE Sbjct: 301 LEHRLLIVGGKLAAAARGEPIFIVGDGKSTVQDLLDELNRDPRRGLLEEHLLDPVLLERE 360 Query: 361 PAAVLELQRQNLTTESVPAAGRRILLLRNGNVSSDITDLVHPSVAAAASLAARIVGLDIA 420 PAAVLELQRQNLTTESVPAAGRRILLLRNGNVSSDITDLVHPSVAAAASLAARIVGLDIA Sbjct: 361 PAAVLELQRQNLTTESVPAAGRRILLLRNGNVSSDITDLVHPSVAAAASLAARIVGLDIA 420 Query: 421 GVDIVAEDISRPLQDQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEENGRI 480 GVDIVAEDISRPLQDQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEENGRI Sbjct: 421 GVDIVAEDISRPLQDQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEENGRI 480 Query: 481 PIVGVTGTHGKTTIARLIARIVHLSGKHVGLACGEGLYFGERQIERGNRANWDAAHRVLL 540 PIVGVTGTHGKTTIARLIARIVHLSGKHVGLACGEGLYFGERQIERGNRANWDAAHRVLL Sbjct: 481 PIVGVTGTHGKTTIARLIARIVHLSGKHVGLACGEGLYFGERQIERGNRANWDAAHRVLL 540 Query: 541 NRAVEAAVFENGSAAILAEGLAYDRCLVGVVANIDPNDSLPEFYIENAEQIATKVKRTQV 600 NRAVEAAVFENGSAAILAEGLAYDRCLVGVVANIDPNDSLPEFYIENAEQIATKVKRTQV Sbjct: 541 NRAVEAAVFENGSAAILAEGLAYDRCLVGVVANIDPNDSLPEFYIENAEQIATKVKRTQV 600 Query: 601 DLVLPDGAAVLNADDPLVADMAQLCDGEVIFFSTDPASELVASHLKEGGRAVFLRGGDLI 660 DLVLPDGAAVLNADDPLVADMAQLCDGEVIFFSTDPASELVASHLKEGGRAVFLRGGDLI Sbjct: 601 DLVLPDGAAVLNADDPLVADMAQLCDGEVIFFSTDPASELVASHLKEGGRAVFLRGGDLI 660 Query: 661 QAEGERQCKVSSVDAIPLTENGAVAYQVENVLAAVGAAWALGISPEVIRAGIELFGTERA 720 QAEGERQCKVSSVDAIPLTENGAVAYQVENVLAAVGAAWALGISPEVIRAGIELFGTERA Sbjct: 661 QAEGERQCKVSSVDAIPLTENGAVAYQVENVLAAVGAAWALGISPEVIRAGIELFGTERA 720 Query: 721 EEQGLKFKNQAA 732 EEQGLKFKNQAA Sbjct: 721 EEQGLKFKNQAA 732 >gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1] Length = 857 Score = 513 bits (1322), Expect = e-146, Method: Compositional matrix adjust. Identities = 314/719 (43%), Positives = 436/719 (60%), Gaps = 23/719 (3%) Query: 4 IEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIPGFPDRLTTWLPTLIEHRCSYE 63 ++ R L+GPN+W+ +A+E + E E N +PGF RL P + E Sbjct: 1 MDVSRIRALRGPNLWSRHTAIEAIVSCPEDERVIDN-MPGFELRLRARFPQI----GFLE 55 Query: 64 ERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHETVT 123 GG + H L L LQ+ AG P F + T G+Y+VVV E V Sbjct: 56 PDGG-----KQVVSLAHALAAAALGLQSQAGCPVTFSRTVSTVETGIYQVVVEYSEEEVG 110 Query: 124 RAALYAARDLVMAAIEDRPYDLDATLSKLRRMVDRLCLGPSTACIVDAADERRIPTIRLS 183 R A A +LV AA D P+DL ATL+++R + + + LGPST IV+AA +R IP RL+ Sbjct: 111 RLAFDLALELVRAAQADAPFDLTATLTRIRELDEDVRLGPSTGSIVNAAIKRGIPFRRLT 170 Query: 184 EGNLVQLGHGCKSRRIWTAESDQTSAIAEGISRDKDLTKSLLETCGVPVPEGRLVESPED 243 +G++VQ G G + +RI AE+ TSAIAE I++DKDLTK LL GVPVP GR+VE+ ED Sbjct: 171 QGSMVQFGWGSRQKRIQAAETSNTSAIAESIAQDKDLTKMLLHAAGVPVPNGRVVETVED 230 Query: 244 AWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAYKVALEEGSGVLVERFVPGLEH 303 A +AA++IG VV+KP D N G+GV ++++T E+I A+ A V+VER++PG + Sbjct: 231 ALKAAEEIGSAVVIKPLDGNQGKGVAVNISTPEQITRAFNNAALISDEVIVERYLPGHDF 290 Query: 304 RLLIVGGKLAAAARGEPIFIVGDGKSTVQDLLDELNRDPRRGLLEEHLLDPVLLEREPAA 363 RLL++G L AAAR +P ++GDG T++ L+D++N DP RG + H + + A Sbjct: 291 RLLVIGKTLVAAARRDPPQVIGDGVHTIRQLIDQVNADPLRG--DGHATSLTKIRLDDIA 348 Query: 364 VLELQRQNLTTESVPAAGRRILLLRNGNVS-----SDITDLVHPSVAAAASLAARIVGLD 418 + L QNL E++PA G R++L N N+S +D+TD VHP VAA A AA++VGLD Sbjct: 349 LSVLSGQNLDPEAIPAQGVRVVLRNNANLSTGGTATDVTDDVHPDVAARAIAAAQMVGLD 408 Query: 419 IAGVDIVAEDISRPLQDQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEENG 478 I GVD+V + L++QGG IVEVNA PGL MHL PS GK R VGEAI+ ++ ++G Sbjct: 409 ICGVDVVCNSVHMSLEEQGGGIVEVNAAPGLRMHLSPSYGKARDVGEAIVSTMYEDGDDG 468 Query: 479 RIPIVGVTGTHGKTTIARLIARIVHLSGKHVGLACGEGLYFGERQIERGNRANWDAAHRV 538 RIP+V V GT+GKTT RLI ++ +G VG+ +G+Y ++ + G+ + +A V Sbjct: 469 RIPVVAVAGTNGKTTTVRLITHLLAKTGLRVGMTNTDGVYIDGQRTDTGDCSGPRSARNV 528 Query: 539 LLNRAVEAAVFENGSAAILAEGLAYDRCLVGVVANIDPNDSLPEFYIENAEQIATKVKRT 598 L + V+AAV E +L EGL +DRC V VV NI D L YI E +A VKR Sbjct: 529 LFHPDVDAAVLETARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLAV-VKRV 587 Query: 599 QVDLVLPDGAAVLNADDPLVADMAQLCDGEVIFFSTDPASELVASHLKEGGRAVFLRGGD 658 V+ V P G AVLNA DP+VA MA C G V FF+ DP ++A+H +G R V+ G Sbjct: 588 IVENVAPTGTAVLNAADPMVAKMAASCPGAVTFFALDPTHPIMATHRAQGHRIVYRDGDA 647 Query: 659 LIQAEG--ERQCKVSSVDAIPLTENGAVAYQVENVLAAVGAAWALGISPEVIRAGIELF 715 ++ A+G E++ K+S IPLT GA+ +QVENV+A+VGAAWAL + E I + F Sbjct: 648 IVAAQGSFEKRLKLS---GIPLTRAGAIGFQVENVMASVGAAWALNLDWEQITGALASF 703 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,359,900 Number of extensions: 106850 Number of successful extensions: 351 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 345 Number of HSP's successfully gapped: 2 Length of query: 732 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 640 Effective length of database: 1,184,250 Effective search space: 757920000 Effective search space used: 757920000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)