BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0103.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311498|ref|YP_003775590.1| phosphatidate cytidylyltransfer...   539   e-154
gi|300309422|ref|YP_003773514.1| phosphatidate cytidiltransferas...    64   1e-11

>gi|300311498|ref|YP_003775590.1| phosphatidate cytidylyltransferase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  539 bits (1388), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 275/275 (100%), Positives = 275/275 (100%)

Query: 1   MLKTRVITALILLAILLPILYFGYFPAFAMAALVFFAAGAWECFRLFKSPRPTLWAALWT 60
           MLKTRVITALILLAILLPILYFGYFPAFAMAALVFFAAGAWECFRLFKSPRPTLWAALWT
Sbjct: 1   MLKTRVITALILLAILLPILYFGYFPAFAMAALVFFAAGAWECFRLFKSPRPTLWAALWT 60

Query: 61  LAFCVILFFTGMPSVRPLYVLCVLLWAVRFVPALGLGLPPVESFANRLLNATYMLSILGC 120
           LAFCVILFFTGMPSVRPLYVLCVLLWAVRFVPALGLGLPPVESFANRLLNATYMLSILGC
Sbjct: 61  LAFCVILFFTGMPSVRPLYVLCVLLWAVRFVPALGLGLPPVESFANRLLNATYMLSILGC 120

Query: 121 FVAIVDLFQRAPLYLLSVMAVVWVADIGAYFSGKGFGRHKLAPTISPGKSWEGAVGGWLA 180
           FVAIVDLFQRAPLYLLSVMAVVWVADIGAYFSGKGFGRHKLAPTISPGKSWEGAVGGWLA
Sbjct: 121 FVAIVDLFQRAPLYLLSVMAVVWVADIGAYFSGKGFGRHKLAPTISPGKSWEGAVGGWLA 180

Query: 181 VLVISAAVAMSMGAGETFQYHLYSRWGWLGFVGVLTVMVAASVVGDLFESQLKRRAGMKD 240
           VLVISAAVAMSMGAGETFQYHLYSRWGWLGFVGVLTVMVAASVVGDLFESQLKRRAGMKD
Sbjct: 181 VLVISAAVAMSMGAGETFQYHLYSRWGWLGFVGVLTVMVAASVVGDLFESQLKRRAGMKD 240

Query: 241 SSNLLPGHGGVLDRIDALIPVLPLAALVDLWLAAA 275
           SSNLLPGHGGVLDRIDALIPVLPLAALVDLWLAAA
Sbjct: 241 SSNLLPGHGGVLDRIDALIPVLPLAALVDLWLAAA 275


>gi|300309422|ref|YP_003773514.1| phosphatidate cytidiltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 12/114 (10%)

Query: 145 ADIGAYFSGKGFGRHKLAPTISPGKSWEGAVGGWLAVLVISAAVAMSMGAGETFQYHLYS 204
           +D+  Y  GK FG+ KLAP ISP K+ EG VGG L    + AA+           Y +  
Sbjct: 195 SDVFQYVWGKLFGKRKLAPQISPSKTLEGLVGGVLTSTAVGAAL-----------YWITP 243

Query: 205 RWGWLGFVGVLTVMVAASVVGDLFESQLKRRAGMKDSSNLLPGHGGVLDRIDAL 258
              W   +  LT+ +     G    S +KR  G+KD   ++ GHGG+LDR+D++
Sbjct: 244 FNVWQAALVALTINILG-FFGGFVLSAIKRDRGLKDWGAMIEGHGGMLDRVDSI 296


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 768,845
Number of extensions: 32477
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)