BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0100.p (791 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311501|ref|YP_003775593.1| outer membrane /protective OMA8... 1602 0.0 gi|300310867|ref|YP_003774959.1| outer membrane lipoprotein [Her... 60 9e-10 >gi|300311501|ref|YP_003775593.1| outer membrane /protective OMA87 antigen protein [Herbaspirillum seropedicae SmR1] Length = 791 Score = 1602 bits (4148), Expect = 0.0, Method: Compositional matrix adjust. Identities = 785/791 (99%), Positives = 788/791 (99%) Query: 1 MKLHPAQHPIPTFSRRLIAAAAFALCSSQAMAVTPFVVKDIRVEGIQRTEAGTVFSYLPV 60 MKLHPAQHPIPTFSRRLIAAAAFALCSSQAMAVTPFVVKDIRVEGIQRTEAGTVFSYLPV Sbjct: 1 MKLHPAQHPIPTFSRRLIAAAAFALCSSQAMAVTPFVVKDIRVEGIQRTEAGTVFSYLPV 60 Query: 61 RVGDTFTDEKGTAAIKALYATGFFRDVRIESEGDVLVVQVVERPAIASVDFSGIKEFDKE 120 RVGDTFTDEKGTAAIKALYATGFFRDVRIESEGDVLVVQVVERPAIASVDFSGIKEFDKE Sbjct: 61 RVGDTFTDEKGTAAIKALYATGFFRDVRIESEGDVLVVQVVERPAIASVDFSGIKEFDKE 120 Query: 121 QLTKALKEIGVAESRIFDRSQVDRAEQELKRQYLSRGLYGAKVSTTVTPVERNRVAITFS 180 QLTKALKEIGVAESRIFDRSQVDRAEQELKRQYLSRGLYGAKVSTTVTPVERNRVAITFS Sbjct: 121 QLTKALKEIGVAESRIFDRSQVDRAEQELKRQYLSRGLYGAKVSTTVTPVERNRVAITFS 180 Query: 181 VDEGDVSRIKQINFVGNKVFSDSTLRDQIKLTTPGWFTWYTKADQYSKEKLQGDIETLRS 240 VDEGDVSRIKQINFVGNKVFSDSTLRDQIKLTTPGWFTWYTKADQYSKEKLQGDIETLRS Sbjct: 181 VDEGDVSRIKQINFVGNKVFSDSTLRDQIKLTTPGWFTWYTKADQYSKEKLQGDIETLRS 240 Query: 241 YYLDRGYLEMQVESTQVSITPDKKDIYITVNIKEGEKYTVSGVKLEGEMFGMEPELAKLV 300 YYLDRGYLEMQVESTQVSITPDKKDIYITVNIKEGEKYTVSGVKLEGEMFGMEPELAKLV Sbjct: 241 YYLDRGYLEMQVESTQVSITPDKKDIYITVNIKEGEKYTVSGVKLEGEMFGMEPELAKLV 300 Query: 301 QLKAGDVYSGAKLTDSTKKIGERLGNFGYAFANVNANPNVDREKKEVAFTIMIDPGKRVY 360 QLKAGDVYSGAKLTDSTKKIGERLGNFGYAFANVNANPNVDREKKEVAFTIMIDPGKRVY Sbjct: 301 QLKAGDVYSGAKLTDSTKKIGERLGNFGYAFANVNANPNVDREKKEVAFTIMIDPGKRVY 360 Query: 361 VRHINIAGNTKTRDEVIRREFRQFEDSWYDGEKIKLSRDRVDRLGYFKEVTLDTPEVPGT 420 VRHINIAGNTKTRDEVIRREFRQFEDSWYDGEKIKLSRDRVDRLGYFKEVTLDTPEVPGT Sbjct: 361 VRHINIAGNTKTRDEVIRREFRQFEDSWYDGEKIKLSRDRVDRLGYFKEVTLDTPEVPGT 420 Query: 421 SDQVDVNMKVEEKPTGNIMLGAGFSQSDKLSLTGSISQENAFGSGNTVGIDINTSSRYRT 480 SDQVDVNMKVEEKPTGNIM+GAGFSQSDKLSLTGSISQENAFGSGNTVGIDINTSSRYRT Sbjct: 421 SDQVDVNMKVEEKPTGNIMVGAGFSQSDKLSLTGSISQENAFGSGNTVGIDINTSSRYRT 480 Query: 481 VSVSTTNPYFTDDGISRTYEVYLRTVRPSVYATGDYRVKTLGGSIKFGVPFSELDRVFFG 540 VSVSTTNPYFTDDGISRTYEVYLRTVRPSVYATGDYRVKTLGGSIKFGVPFSELDRVFFG Sbjct: 481 VSVSTTNPYFTDDGISRTYEVYLRTVRPSVYATGDYRVKTLGGSIKFGVPFSELDRVFFG 540 Query: 541 VGLENTDVSTDTTSPTLYRQYVRDFGGAGAAGCDVTNTSNNCGIGSARTTSIPLTVAWQR 600 VGLENTDVSTDTTSPTLYRQYVRDFGGAG AGCDVT++ N CGIGSARTTSIPLTVAWQR Sbjct: 541 VGLENTDVSTDTTSPTLYRQYVRDFGGAGVAGCDVTSSGNGCGIGSARTTSIPLTVAWQR 600 Query: 601 DGRDSALVPTTGRYQRANLEVSYLGTLKYYRASYQHQYFQPFFSKAVTLALNGEVDYGRG 660 DGRDSALVPTTGRYQRANLEVSYLGTLKYYRASYQHQYFQPFFSKAVTLALNGEVDYGRG Sbjct: 601 DGRDSALVPTTGRYQRANLEVSYLGTLKYYRASYQHQYFQPFFSKAVTLALNGEVDYGRG 660 Query: 661 IGSKPYPVFKNYYAGGIGTVRGYEASSLGSLKDQYGDSMGGASRLYGNVELQFPFPGSGQ 720 IGSKPYPVFKNYYAGGIGTVRGYEASSLGSLKDQYGDSMGGASRLYGNVELQFPFPGSGQ Sbjct: 661 IGSKPYPVFKNYYAGGIGTVRGYEASSLGSLKDQYGDSMGGASRLYGNVELQFPFPGSGQ 720 Query: 721 DRTLRWFTFFDGGNVFADGQNIKFNDLRYSAGVGISWVSPIGPLKLSFGKPLNLKTGDKS 780 DRTLRWFTFFDGGNVFADGQNIKFNDLRYSAGVGISWVSPIGPLKLSFGKPLNLKTGDKS Sbjct: 721 DRTLRWFTFFDGGNVFADGQNIKFNDLRYSAGVGISWVSPIGPLKLSFGKPLNLKTGDKS 780 Query: 781 QTFQFQLGTGF 791 QTFQFQLGTGF Sbjct: 781 QTFQFQLGTGF 791 >gi|300310867|ref|YP_003774959.1| outer membrane lipoprotein [Herbaspirillum seropedicae SmR1] Length = 588 Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 124/588 (21%), Positives = 203/588 (34%), Gaps = 73/588 (12%) Query: 203 STLRDQIKLTTPGWFTWYTKADQYSKEKLQGDIET----LRSYYLDRGYLEMQVESTQVS 258 S L+D + L+ Y D S E+L+ ++T +R GY + ++ S Sbjct: 35 SLLKDFLDLSR------YQDRDDISDEQLKFMMDTAGEQVRDLTATEGYFTPVTKVSEES 88 Query: 259 ITPDKKDIYITVNIKEGEKYTVSGVKLEGEMFGMEPELAKLVQLKAGDVYSGAKL----- 313 ITV + G + V ++ + A++ QL+ S + Sbjct: 89 AAGKDGVRRITVTVDPGPRTLVESAEISVTGSAASQDAARVAQLRTDWSLSPGEPFRQQD 148 Query: 314 TDSTKKIG-ERLGNFGYAFANV-NANPNVDREKKEVAFTIMIDPGKRVYVRHINIAGNTK 371 D K G L YA A + ++ + + ++ ++ D G + + I G + Sbjct: 149 WDKAKNAGLATLQQKKYAAARIADSEARIAPQAQQADLSVRYDSGPAFTLGALQITGTRR 208 Query: 372 TRDEVIRREFRQFEDSWYDGEKIKLSRDRVDRLGYFKEVTLDTPEVPGTSDQVDVNMKVE 431 + +IR YD +++ + ++ YF + + P DQ V ++V Sbjct: 209 YPESIIRNVSPLIVGEPYDVDRLLALQRQIQNTPYFSNAIVAIDDDPAHPDQTPVKVQVT 268 Query: 432 EKPTGNIMLGAGFSQSDKLSLTGSISQENAFGSGNTVGIDINTSSRYRTVSVSTTNPYFT 491 E PT I G G+ G S N F + + + +S P + Sbjct: 269 EFPTQRIRTGVGYGTDTGAQAEGRYSHYNVFNRAYVFDSQLRLEQKRQYGLLSLAMPPDS 328 Query: 492 DDGISRTYEVYLRTVRPSVYATGDYRVKTLGGSIKFGVPFSELDRVFFGVGLENTDVSTD 551 ++ Y RT + D R + +G L R N+D Sbjct: 329 KAFVNSINTAYDRTTLEGI----DLRTQQVG-----------LKRA------RNSDNYDT 367 Query: 552 TTSPTLYRQYVRDFGGAGAAGCDVTNTSNNCGIGSARTTSIPLTVAWQRDGRDSALVPTT 611 T S T YR + G VT +N +P AW R D+ + P Sbjct: 368 TYSLTYYRDELVQENG-------VTLPANTIVTPGKHRALVP-GFAWSRRNVDNPIFPRH 419 Query: 612 GRYQRANLEVSYLGTL---KYYRASYQHQYFQPFFSKAVTL---ALNGEVDYGRGIGSKP 665 G ++ G L + R + + F P + + + L G GR GS P Sbjct: 420 GNLLTLEAGLALKGVLTDQSFSRLYGRFKQFVPVGKRDIVVLRAELGGVFTAGRA-GSVP 478 Query: 666 YPVFKNYYAGGIGTVRGYEASSLGSLKDQYGDSMGGASRLYGNVELQFPFPGSGQDRTLR 725 + + GG +VRGY S+G+ +Q G G+ E Q R Sbjct: 479 ASLL--FRTGGNDSVRGYSYQSIGN--EQNGTVYPTKYLAVGSTEYQ------------R 522 Query: 726 WFTFFDGGNVFAD----GQNIKFNDLRYSAGVGISWVSPIGPLKLSFG 769 WF+ G VF D N + G G W SP+G L L Sbjct: 523 WFSENWGAAVFYDMGAAADNWSNKTFYHGVGTGARWRSPVGTLNLDLA 570 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,406,219 Number of extensions: 102902 Number of successful extensions: 279 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 275 Number of HSP's successfully gapped: 2 Length of query: 791 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 698 Effective length of database: 1,179,515 Effective search space: 823301470 Effective search space used: 823301470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)