BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0089.p
         (468 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311512|ref|YP_003775604.1| membrane protease stomatin/proh...   609   e-175
gi|300311511|ref|YP_003775603.1| transmembrane protein [Herbaspi...   221   1e-58

>gi|300311512|ref|YP_003775604.1| membrane protease
           stomatin/prohibitin protein [Herbaspirillum seropedicae
           SmR1]
          Length = 303

 Score =  609 bits (1571), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 302/303 (99%), Positives = 302/303 (99%)

Query: 166 MLGSVTLVIFFLAIVFVVQTVKVVPQQHAWVVERLGKYHATLAPGLNIVVPFIDRVAYKH 225
           MLGSVTLVIFFLAIVFVVQTVKVVPQQHAWVVERLGKYHATLAPGLNIVVPFIDRVAYKH
Sbjct: 1   MLGSVTLVIFFLAIVFVVQTVKVVPQQHAWVVERLGKYHATLAPGLNIVVPFIDRVAYKH 60

Query: 226 ILKEIPLDVPPQVCITKDNTQLQVDGILYFQITDPMRASYGSSNYIAAITQLAQTTLRSV 285
           ILKEIPLDVPPQVCITKDNTQLQVDGILYFQITDPMRASYGSSNYIAAITQLAQTTLRSV
Sbjct: 61  ILKEIPLDVPPQVCITKDNTQLQVDGILYFQITDPMRASYGSSNYIAAITQLAQTTLRSV 120

Query: 286 IGKMELDKTFEERDHINTAIVSAIDESAENWGVKVLRYEIKDLTPPKEILHAMQAQITAE 345
           IGKMELDKTFEERDHINTAIVSAIDESAENWGVKVLRYEIKDLTPPKEILHAMQAQITAE
Sbjct: 121 IGKMELDKTFEERDHINTAIVSAIDESAENWGVKVLRYEIKDLTPPKEILHAMQAQITAE 180

Query: 346 REKRALIAASEGRKQEQINIATGEREAAIARSEGEKQASINRAEGQAAAILAIAEASAEA 405
           REKRALIAASEGRKQEQINIATGEREAAIARSEGEKQASIN AEGQAAAILAIAEASAEA
Sbjct: 181 REKRALIAASEGRKQEQINIATGEREAAIARSEGEKQASINGAEGQAAAILAIAEASAEA 240

Query: 406 IRKTAAAIQQPGGEDAVNLKVAEQYVDAFGKLAKTNNSIIVPANLSDMSGLIASALQVIK 465
           IRKTAAAIQQPGGEDAVNLKVAEQYVDAFGKLAKTNNSIIVPANLSDMSGLIASALQVIK
Sbjct: 241 IRKTAAAIQQPGGEDAVNLKVAEQYVDAFGKLAKTNNSIIVPANLSDMSGLIASALQVIK 300

Query: 466 QQK 468
           QQK
Sbjct: 301 QQK 303


>gi|300311511|ref|YP_003775603.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score =  221 bits (562), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   MTDWAIWLVLAGGLLGAELFTGTFYLLMIALGLVAGAVAAWCGLVLEWQLLVAAVVGVAA 60
           MTDWAIWLVLAGGLLGAELFTGTFYLLMIALGLVAGAVAAWCGLVLEWQLLVAAVVGVAA
Sbjct: 2   MTDWAIWLVLAGGLLGAELFTGTFYLLMIALGLVAGAVAAWCGLVLEWQLLVAAVVGVAA 61

Query: 61  VLGLRSSPYGRLRQSNSNDDPSLLLDIGQSIEVTAWQAHGTQYLARVPY 109
           VLGLRSSPYGRLRQSNSNDDPSLLLDIGQSIEVTAWQAHGTQYLARVPY
Sbjct: 62  VLGLRSSPYGRLRQSNSNDDPSLLLDIGQSIEVTAWQAHGTQYLARVPY 110


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,053,336
Number of extensions: 33784
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 3
Length of query: 468
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 379
Effective length of database: 1,198,455
Effective search space: 454214445
Effective search space used: 454214445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)