BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0087.p (473 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311514|ref|YP_003775606.1| two component sensor histidine ... 959 0.0 gi|300313895|ref|YP_003777987.1| two-component system sensor his... 125 8e-30 gi|300310848|ref|YP_003774940.1| two component sensor histidine ... 111 1e-25 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 104 2e-23 gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine ... 99 6e-22 >gi|300311514|ref|YP_003775606.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 473 Score = 959 bits (2480), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/473 (99%), Positives = 473/473 (100%) Query: 1 VGRLFWKFFFFIAIAQITATFGVGVLFWVENLERSNRNSEIDLSPPASFMIRSAAATLQF 60 +GRLFWKFFFFIAIAQITATFGVGVLFWVENLERSNRNSEIDLSPPASFMIRSAAATLQF Sbjct: 1 MGRLFWKFFFFIAIAQITATFGVGVLFWVENLERSNRNSEIDLSPPASFMIRSAAATLQF 60 Query: 61 GGTEALRSLINEGRPHRLQLYALDEDNKDLMGREVSPKLVEQAKHILATERERRVVERVK 120 GGTEALRSLINEGRPHRLQLYALDEDNKDLMGREVSPKLVEQAKHILATERERRVVERVK Sbjct: 61 GGTEALRSLINEGRPHRLQLYALDEDNKDLMGREVSPKLVEQAKHILATERERRVVERVK 120 Query: 121 APNGHSYLMFIPAPNDEFGPGGPPGGAREPHRIGERGPKSMFFPTMPIVVALLASLVFAL 180 APNGHSYLMFIPAPNDEFGPGGPPGGAREPHRIGERGPKSMFFPTMPIVVALLASLVFAL Sbjct: 121 APNGHSYLMFIPAPNDEFGPGGPPGGAREPHRIGERGPKSMFFPTMPIVVALLASLVFAL 180 Query: 181 LLAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADLGRDFDVMTAKLRTLMES 240 LLAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADLGRDFDVMTAKLRTLMES Sbjct: 181 LLAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADLGRDFDVMTAKLRTLMES 240 Query: 241 QRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIERESVRMDKLVGELLTLSR 300 QRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIERESVRMDKLVGELLTLSR Sbjct: 241 QRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIERESVRMDKLVGELLTLSR 300 Query: 301 LEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCRVQVKGNPELLYRAIEN 360 LEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCRVQVKGNPELLYRAIEN Sbjct: 301 LEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCRVQVKGNPELLYRAIEN 360 Query: 361 VLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFRSSRTKSN 420 VLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFRSSRTKSN Sbjct: 361 VLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFRSSRTKSN 420 Query: 421 SSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLPFMADEPARGDTVES 473 SSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLPFMADEPARGDTVES Sbjct: 421 SSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLPFMADEPARGDTVES 473 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 125 bits (314), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 92/296 (31%), Positives = 151/296 (51%), Gaps = 9/296 (3%) Query: 168 IVVALLASLVFALL---LAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADLG 224 I++A++A ++ A L ++ + P+ + A ++ A+G+ + +E DE+ L Sbjct: 175 IIIAVVAVMLAAFLVVRISGVLTRPLTRVARATHRLASGDYAIRVE---VESGDEVGMLA 231 Query: 225 RDFDVMTAKLRTLMESQRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIERE 284 +DF+ + L + +R + DVSHELR+P+A L + TL ++ E Sbjct: 232 QDFNQLAMTLERNEKLRREFMADVSHELRTPLAILNGQLEALEDGVLQPDAQTLRSLKSE 291 Query: 285 SVRMDKLVGELLTLSRLEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCR 344 ++KLVG+L LS +A I + +L D S G + +L Sbjct: 292 VEHLNKLVGDLYDLSLADAGALTYRRADIDLAPLLRDSAALYSDRFSQRGMRLSCELPAS 351 Query: 345 VQVKGNPELLYRAIENVLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEM 404 + V G+ L + + N+ N++++T G +Q+H L + + HL D PGVP E M Sbjct: 352 MPVHGDAARLQQLLSNLFENSLRYTDAGGRLQVHAHLQQ--QHWHLVFDDSEPGVPPEVM 409 Query: 405 NSIFELFFRSSRTKSNSSG-HGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLP 459 +FE FFR +++ +SG GLGL+I RRIV+AHQG I A+ GGLRV + LP Sbjct: 410 ARLFERFFRVEASRNRASGGAGLGLAICRRIVDAHQGTIGASASPLGGLRVVVVLP 465 >gi|300310848|ref|YP_003774940.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 465 Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/328 (28%), Positives = 163/328 (49%), Gaps = 35/328 (10%) Query: 140 PGGPPGGAREPHRIGERGPKSMFFPTMPIVVALLASLVFALLLAWYF----SHPIGHLKN 195 PG PP R G GP S+F + +L LV +LAW + PI L Sbjct: 161 PGEPPALR---ARAGPGGPASLFG-----LQYILLFLVLIAMLAWLVARMATRPIRQLAQ 212 Query: 196 AFNQAANGNLDLELEPVMSARNDELADLGRDFDVMTAKLRTLMESQRRLLHDVSHELRSP 255 A ++ + D++ P+ E+ F+ M A++R ++ + +L ++H+L++P Sbjct: 213 AASRLGS---DIDHAPLAETGPTEIRQAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTP 269 Query: 256 IARLQVAIGLARVQDKDKLDLTLERIERESVRMDKLVGELLTLSRLEANVPGSMEEPIAI 315 + R+++ R++ L + I+ V M +V E L L+R SM+ I Sbjct: 270 LTRMRL-----RLEKVSDPGLQQKLIDDLGV-MHGMVREGLDLAR-------SMDSSEKI 316 Query: 316 EAM-LGDMINDASFEAEAIGKHVDDQLDCRVQVKGNPELLYRAIENVLRNAIKHTAPGTT 374 +A+ + +++ +A G+ V Q R V P L R + N++ NA K+ G + Sbjct: 317 QALDIDSLLDSVCADAADAGQDVALQGSTRAFVMAQPGALRRCLTNLIDNACKY---GKS 373 Query: 375 VQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFRSSRTKS-NSSGHGLGLSIARR 433 ++ L++ + + + I D+GPG+PE E+ ++FE F+R ++S ++ G GLGL+IA Sbjct: 374 ARVSIALEQ--QKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTGGTGLGLTIALN 431 Query: 434 IVEAHQGFIQAANRSNGGLRVDITLPFM 461 I E H G ++ N + GGL V + LP M Sbjct: 432 IAENHHGQLRLRNLAEGGLEVLLELPPM 459 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 145/279 (51%), Gaps = 16/279 (5%) Query: 176 LVFALLLAWY-FSHPIGHLKNAFNQAANGNLDLELEPVMSAR-NDELADLGRDFDVMTAK 233 L AL L W+ S + L Q +L P+ S + +E++ L R + M A+ Sbjct: 83 LPVALALVWFALSRGLSPLSE-LQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDMLAR 141 Query: 234 LRTLMESQRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDL--TLERIERESVRMDKL 291 L + Q+R + D +H++++P+A +++ LA QD D++D+ +LE++ + S +L Sbjct: 142 LSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQD-DQVDVRRSLEQLAKSSETATRL 200 Query: 292 VGELLTLSRLE--ANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVD---DQLDCRVQ 346 V +LL+L+R E + G M P+ + + ++ D + + + +D +Q D + Sbjct: 201 VNQLLSLARAENQQSQSGGMI-PVELNELARSVVQD--WVPMSFTQRIDLGFEQPDHPIL 257 Query: 347 VKGNPELLYRAIENVLRNAIKHTAPGTT--VQIHTQLDEINKLLHLSILDRGPGVPEEEM 404 + GNP +L + N+L NA+ +T V + + DE L L + D GPG+P E Sbjct: 258 ITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPVAER 317 Query: 405 NSIFELFFRSSRTKSNSSGHGLGLSIARRIVEAHQGFIQ 443 ++FE F+R T S SG GLGL+I R I + H+ ++ Sbjct: 318 ANVFERFYRILGTPSTGSGLGLGLAIVREIAQQHEAALE 356 >gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 444 Score = 99.4 bits (246), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 80/277 (28%), Positives = 137/277 (49%), Gaps = 27/277 (9%) Query: 195 NAFNQAANGNLDLELEPVMSARNDELADLGRDFDVMTAKLRTLMESQRRLLHDVSHELRS 254 N+ A+ + E++P+ A ND LA +L+ E+QR + D +HELR+ Sbjct: 181 NSLQPLADVGMPQEIQPLTHALNDLLA-----------RLKHATETQRAFVADAAHELRT 229 Query: 255 PIARLQVAIGLA-RVQDKDKLDLTLERIERESVRMDKLVGELLTLSRLEANVPGSME-EP 312 P+ L++ LA R D+++ ++ R LV +LLTL+R E P +M Sbjct: 230 PLTALRLQTQLAERAVDEEERRAAFADLKNGLERTTHLVHQLLTLARQE---PDAMSFTQ 286 Query: 313 IAIEAMLGDMINDASFEAE--AIGKHVDDQLDCR--VQVKGNPELLYRAIENVLRNAIKH 368 + + A+LG ++ D S AE I + DQ D ++V GN + L N++ NA+++ Sbjct: 287 VDLRALLGSVVGDLSSVAEHGGIDLGLSDQGDDGRPLRVTGNADALRILFNNLVDNALRY 346 Query: 369 TAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFRSSRTKSNSS-----G 423 T G V + L + + D GPG+ E E+ +F+ F+R+ ++ S G Sbjct: 347 TPAGGVVDVGVDLSTAG-YCTVVVQDSGPGIAESELPRVFDRFYRAQHSQEGSGSRAAFG 405 Query: 424 HGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLPF 460 GLGL+I R+I + H+ ++ N + GL+ + P Sbjct: 406 SGLGLAIVRQIADLHRVPVELRNTGH-GLQARVVFPL 441 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,287,544 Number of extensions: 48810 Number of successful extensions: 312 Number of sequences better than 1.0e-08: 37 Number of HSP's gapped: 259 Number of HSP's successfully gapped: 37 Length of query: 473 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 384 Effective length of database: 1,198,455 Effective search space: 460206720 Effective search space used: 460206720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)