BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0085.p (528 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 1016 0.0 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 196 5e-51 gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 175 1e-44 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 153 4e-38 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust. Identities = 520/528 (98%), Positives = 522/528 (98%) Query: 1 MNFPDPATLARLMGLMCDAIALRGAQQAEAALAALDQALALDPSFLPLYMQRADLLQEMG 60 MN PDPATLARLMGLMCDAIALRGAQQAEAALAALDQALALDPSFLPLYMQRADLLQEMG Sbjct: 1 MNSPDPATLARLMGLMCDAIALRGAQQAEAALAALDQALALDPSFLPLYMQRADLLQEMG 60 Query: 61 ALPEAIAACAACLDLAPDYDEARALHRSLLQRWATQCELQTADEGASGSAALIDLARARL 120 ALPEAIAACAACLDLAPDYDEARALHRSLLQRWATQCELQTADEGASGSAALIDLARARL Sbjct: 61 ALPEAIAACAACLDLAPDYDEARALHRSLLQRWATQCELQTADEGASGSAALIDLARARL 120 Query: 121 QLDQPLPALAAVERALASGQAGLALHALHADILLRLNRHEEALECYPPAADDDQARALRA 180 QLDQPLPALAAVERALASGQAGLALHALHADILLRLNRHEEALECYPPAAD+DQARAL A Sbjct: 121 QLDQPLPALAAVERALASGQAGLALHALHADILLRLNRHEEALECYPPAADEDQARALHA 180 Query: 181 FNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVGRAHMLLSQQHYAEGWRAHEARFGI 240 FNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVGRAHMLLSQQHYAEGWRAHEARFGI Sbjct: 181 FNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVGRAHMLLSQQHYAEGWRAHEARFGI 240 Query: 241 AELARRGIDSPRPRWRAGEEVRGKLVLLWAEQGQGDTLQFARYIPLVAQQAAEVSLCAPA 300 AELARRGIDSPRPRWRAGE VRGK VLLWAEQGQGDTLQFARYIPLVAQQAAEVSLCAPA Sbjct: 241 AELARRGIDSPRPRWRAGEPVRGKRVLLWAEQGQGDTLQFARYIPLVAQQAAEVSLCAPA 300 Query: 301 SLLAVLAPCLPQVRCMANPGEAVDHDLHASLLSLPLLLGLPDPRQGPPSPYLAAQPQRVQ 360 SLLAVLAPCLPQVRCMANPGEA DHDLHASLLSLPLLLGLPDPRQGPPSPYLAAQPQRVQ Sbjct: 301 SLLAVLAPCLPQVRCMANPGEAPDHDLHASLLSLPLLLGLPDPRQGPPSPYLAAQPQRVQ 360 Query: 361 QWQAYLSLLWPAMPRRPRIGIAWAGRQYATVHHSRDIPLDALAPLWTLPADFVSLQVEVP 420 QWQAYLS LWPAMPRRPR+GIAWAGRQYATVHHSRDIPLDALAPLWTLPADFVSLQVEVP Sbjct: 361 QWQAYLSALWPAMPRRPRLGIAWAGRQYATVHHSRDIPLDALAPLWTLPADFVSLQVEVP 420 Query: 421 AGDQAAHATLAQRLHTPTLVDWADTAALLCALDLVISVDTAVVHLAGALGVPCLLPLRYD 480 AGDQAAHATLAQRLHTPTLVDWADTAALLCALDLVISVDTAVVHLAGALGVPCLLPLRYD Sbjct: 421 AGDQAAHATLAQRLHTPTLVDWADTAALLCALDLVISVDTAVVHLAGALGVPCLLPLRYD 480 Query: 481 GEWRWGVKGSQTPWYPSLQLLRQRERGQWGPVVEEMLAVCTQRLLQPK 528 GEWRWGVKGSQTPWYPSLQLLRQRERGQWGPVVEEMLAVCTQRLLQPK Sbjct: 481 GEWRWGVKGSQTPWYPSLQLLRQRERGQWGPVVEEMLAVCTQRLLQPK 528 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 196 bits (497), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 172/529 (32%), Positives = 236/529 (44%), Gaps = 58/529 (10%) Query: 15 LMCDAIALRGAQQAEAALAALDQALALDPSFLPLYMQRADLLQEMGALPEAIAACAACLD 74 L+ ALR + ALA L++A AL P + QR ++L + A +A + + Sbjct: 113 LLARGAALRRLGRNREALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVA 172 Query: 75 LAPDYDEARALHRSLLQRWATQCELQTADEGASGSAALIDLARARLQLDQPLPALAAVER 134 L PD+ EA W L + + QLDQ AL A +R Sbjct: 173 LRPDFIEA----------WFN----------------LGNTCKDGNQLDQ---ALRAYDR 203 Query: 135 ALASGQAGLALHALHADILLRLNRHEEALECYPPAADDDQARALRAFNMADILRRMGRIE 194 AL + +L ++ R EAL+ Y A D+ FN L ++ R E Sbjct: 204 ALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALALDERAPDLWFNRGSTLEQLYRFE 263 Query: 195 QAQAAFEQALRWHPDFPEAEVGRAHMLLSQQHYAEGWRAHEARFGIAELARRGIDSPRPR 254 +A ++ +A PD A A M L Q + GW+ E R+ ++ + +P Sbjct: 264 EASESYRRAKALKPDAGSATWNEALMQLRQGDFVNGWKGFETRWATEQMRGQQRQFMQPL 323 Query: 255 WRAGEEVRGKLVLLWAEQGQGDTLQFARYIPLVAQQAAEVSLCAPASLLAVLAPCLPQVR 314 W + + GK +LL AEQG GDTLQF RY PL+A + A V L +L LA LP V Sbjct: 324 WLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARGARVILEVQPALTRQLA-GLPGVT 382 Query: 315 CMANPGEAVDH------DLHASLLSLPLLLGLPDPRQGPPSPYLAAQPQRVQQWQAYLSL 368 + DH D H L+SLPL P +PYL + W L Sbjct: 383 QVI----GTDHFMRPPFDFHCPLMSLPLACKTFSEADIPRAPYLLPEASSWAAWHQRLP- 437 Query: 369 LWPAMPRRPRIGIAWAGRQYAT------VHHSRDIPLDALAPLWTLPA-----DFVSLQV 417 R R+G+ WAG T + R +P LAPL L +F SLQV Sbjct: 438 ----RNRALRVGLVWAGSSAQTHPDAVRIDGERSLPFATLAPLVELAREHAALEFYSLQV 493 Query: 418 EVPAGDQAAHATLAQ--RLHTPTLVDWADTAALLCALDLVISVDTAVVHLAGALGVPCLL 475 A Q LA R +P L D+A+T ALL LDL+I+VDT+V HLAGALG P L Sbjct: 494 GQDAVAQLHAHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSVCHLAGALGRPVWL 553 Query: 476 PLRYDGEWRWGVKGSQTPWYPSLQLLRQRERGQWGPVVEEMLAVCTQRL 524 R++G WRW V+ +PWY + + QR GQW V+ + A Q+L Sbjct: 554 LNRHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIARVRAALQQQL 602 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 124/372 (33%), Positives = 173/372 (46%), Gaps = 16/372 (4%) Query: 157 NRHEEALECYPPAADDDQARALRAFNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVG 216 +R ++A+ + A + D AL N+ I G +E A F +AL P++P A Sbjct: 277 DRFDDAMRMFNKALEVDSKHALTYNNIGAIQHDHGDLEDAIGNFRKALELRPNYPTARHN 336 Query: 217 RAHMLLSQQHYAEGWRAHEARFGIAELAR-----RGIDSPRPRWRAGEEVRGKLVLLWAE 271 A LL Q H EGW HE+R E + + P+W + GK +LL E Sbjct: 337 IALSLLLQGHLKEGWECHESRLVTRERSHVYRLIHKLFDLIPKWDGKSSLAGKYILLMHE 396 Query: 272 QGQGDTLQFARYIPLVAQQAAEVSLCAPASLLAVLAPCLPQVRCMANPGEAVDHDLHASL 331 QG GD++QF RY+ +V Q A V+L L + P+V + D L Sbjct: 397 QGFGDSIQFLRYVRMVLDQGARVALHVKNPLYRLFQSYSPEVTLVRESDPLPPCDCAYVL 456 Query: 332 LSLPLLLGLPDPRQGP--PSPYLAAQPQRVQQWQAYLSLLWPAMPRRPRIGIAWAGRQYA 389 +SLP +G P P YL+A P W + L + P + R+G+ W G Sbjct: 457 MSLPYAMGTDTVDDIPSVPGGYLSADPILKSSWGEKIRQLSQS-PEKLRVGVVWGGNPEH 515 Query: 390 TVHHSRDIPLDALAPLWTLPA-DFVSLQVEVPAGDQAAHATLAQRLHTPTL----VDWAD 444 R I +D A L+ LP +F SLQ P A L L L D+AD Sbjct: 516 GNDRHRSIAMDKFATLFQLPNIEFYSLQKGKPLD---AFKALPPGLPIFNLGDDCQDFAD 572 Query: 445 TAALLCALDLVISVDTAVVHLAGALGVPCLLPLRYDGEWRWGVKGSQTPWYPSLQLLRQR 504 TAA + LDLV+SVDT+VVHLAGALG P + L + +WRW +PWYP ++L RQ Sbjct: 573 TAAAIANLDLVVSVDTSVVHLAGALGHPTWVLLPHVPDWRWLQDREDSPWYPGMRLFRQP 632 Query: 505 ERGQWGPVVEEM 516 W V+ ++ Sbjct: 633 ALSDWESVLTKV 644 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 153 bits (386), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 174/375 (46%), Gaps = 44/375 (11%) Query: 146 HALHADILLRLNRHEEALECYPPAADDDQARALRAFNMADILRRMGRIEQAQAAFEQALR 205 H L RL +HEEA++ Y A D A N+A L +GR+EQA +E R Sbjct: 218 HVSRGTTLARLRQHEEAIDSYRRALRIDDKDADAHLNLALSLLVLGRLEQAWPLYE--WR 275 Query: 206 WHPDFPEAEVGRAHMLLSQQHYAEGWRAHEARFGIAELARRGIDSPRPRWRAGEEVRGKL 265 W EG A R P W G + GK Sbjct: 276 W----------------------EGRSADPYRHATI-----------PAWNGGSSLAGKR 302 Query: 266 VLLWAEQGQGDTLQFARYIPLVAQQAAEVSLCAPASLLAVL----APCLPQVRCMANPGE 321 +LLWAEQGQGDT+QF+RY+ L+ Q A+V L PASLLA++ P + M P Sbjct: 303 ILLWAEQGQGDTIQFSRYVALILQAGAQVVLEVPASLLALMHSLAVPTPLTLVAMGEPLP 362 Query: 322 AVDHDLHASLLSLPLLLGLPDPRQGPPSPYLAAQPQRVQQWQAYLSLLWPAMPRRPRIGI 381 VD L L+SLPL+ PYL A P R W+ L+ L P P R RIG+ Sbjct: 363 EVDFQL--PLMSLPLVCNTRADDIPAAVPYLCADPARRILWEERLATLAPRSPARMRIGL 420 Query: 382 AWAGRQYATVHHSRDIPLDALAPLWTL--PADFVSLQVEVPAGD-QAAHATLAQRLHTPT 438 +G R I L APL DF +Q ++ D Q Sbjct: 421 VCSGNAGNVNDARRSIELSRFAPLALARPQLDFFVIQPDLRQADRQWCEQQPGWHWVGAA 480 Query: 439 LVDWADTAALLCALDLVISVDTAVVHLAGALGVPCLLPLRYDGEWRWGVKGSQTPWYPSL 498 + D+ADTAA+L +DLVISVDTA HLAGA+ P + L Y +WRW + + +PWYP+ Sbjct: 481 INDFADTAAVLAGMDLVISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWYPTA 540 Query: 499 QLLRQRERGQWGPVV 513 +L RQ++ G W V+ Sbjct: 541 RLFRQQQPGAWDDVI 555 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,403,849 Number of extensions: 53170 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 4 Length of query: 528 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 438 Effective length of database: 1,193,720 Effective search space: 522849360 Effective search space used: 522849360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)