BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0073.p
         (179 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311527|ref|YP_003775619.1| cytosine/adenosine deaminases p...   361   e-101
gi|300312948|ref|YP_003777040.1| bifunctional diaminohydroxyphos...    57   9e-10

>gi|300311527|ref|YP_003775619.1| cytosine/adenosine deaminases
           protein [Herbaspirillum seropedicae SmR1]
          Length = 185

 Score =  361 bits (926), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/179 (98%), Positives = 179/179 (100%)

Query: 1   VPSASAAAGEADLLHMRAALEQARHAWALGEVPVGAVVVKDGVVIATGFNQPIGKHDPTA 60
           VPSAS+AAGEADLLHMRAALEQARHAWALGEVPVGAVVVKDGVVIATGFNQPIGKHDPTA
Sbjct: 7   VPSASSAAGEADLLHMRAALEQARHAWALGEVPVGAVVVKDGVVIATGFNQPIGKHDPTA 66

Query: 61  HAEIMALRRAAEILGNYRLPGCELYVTLEPCVMCSGAMMHARLARVVFGAADPKTGACGS 120
           HAEIMALRRAAEILGNYRLPGCELYVTLEPCVMCSGAMMHARLARVVFGAADPKTGACGS
Sbjct: 67  HAEIMALRRAAEILGNYRLPGCELYVTLEPCVMCSGAMMHARLARVVFGAADPKTGACGS 126

Query: 121 VLNLFEQEQLNHHTALLGGVMAEECGQLLKDFFAMRREQLKQQRLQAAAGEGSQENGAA 179
           VLNLFEQ+QLNHHTALLGGVMAEECGQLLKDFFAMRREQLKQQRLQAAAGEGSQENGAA
Sbjct: 127 VLNLFEQDQLNHHTALLGGVMAEECGQLLKDFFAMRREQLKQQRLQAAAGEGSQENGAA 185


>gi|300312948|ref|YP_003777040.1| bifunctional
           diaminohydroxyphosphoribosyl aminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 354

 Score = 57.0 bits (136), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 72/155 (46%), Gaps = 19/155 (12%)

Query: 34  VGAVVVKDGVVIATGFNQPIGKHDPTAHAEIMALRRAAEILGNYRLPGCELYVTLEPCVM 93
           VG V+VKD  +I  GF QP G +    HAEI A+  AA    + R  G  +YVTLEPC  
Sbjct: 21  VGCVIVKDQRIIGAGFTQPPGGN----HAEIQAMADAAARGHDVR--GATVYVTLEPCSH 74

Query: 94  ------CSGAMMHARLARVVFGAADPKTGACGSVLNLFEQEQLNHHTALLGGVMAEECGQ 147
                 C+ A++ A +ARVV   ADP     G  L   +   +        G++ EE   
Sbjct: 75  FGRTPPCADALIRAGVARVVAAIADPNPMVAGQGLARLQAAGIEVSC----GLLEEEARD 130

Query: 148 LLKDFFAMRREQLKQQRLQAAA---GEGSQENGAA 179
           +   F    R      R+++AA   G+ +  NG +
Sbjct: 131 INIGFLHRMRTGRPWVRMKSAASLDGKTALHNGVS 165


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 523,919
Number of extensions: 17978
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 179
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 100
Effective length of database: 1,245,805
Effective search space: 124580500
Effective search space used: 124580500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)