BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0068.p
         (416 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311533|ref|YP_003775625.1| transmembrane protein [Herbaspi...   796   0.0  

>gi|300311533|ref|YP_003775625.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/416 (100%), Positives = 416/416 (100%)

Query: 1   VQSNELAAPLAWAAAYFLAGLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLV 60
           VQSNELAAPLAWAAAYFLAGLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLV
Sbjct: 23  VQSNELAAPLAWAAAYFLAGLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLV 82

Query: 61  LIIAAQVGLGALEQRELWRVLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGG 120
           LIIAAQVGLGALEQRELWRVLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGG
Sbjct: 83  LIIAAQVGLGALEQRELWRVLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGG 142

Query: 121 ASVASALLGAGWQQVTQGLPFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRGLARG 180
           ASVASALLGAGWQQVTQGLPFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRGLARG
Sbjct: 143 ASVASALLGAGWQQVTQGLPFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRGLARG 202

Query: 181 EFLIGLACLAGMLATTYLSFNSDLDRRLLDVEFATSYLPLLLLAVLTLAWGARSGAWAAL 240
           EFLIGLACLAGMLATTYLSFNSDLDRRLLDVEFATSYLPLLLLAVLTLAWGARSGAWAAL
Sbjct: 203 EFLIGLACLAGMLATTYLSFNSDLDRRLLDVEFATSYLPLLLLAVLTLAWGARSGAWAAL 262

Query: 241 LLALLAMVYDARGGGPFVKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEA 300
           LLALLAMVYDARGGGPFVKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEA
Sbjct: 263 LLALLAMVYDARGGGPFVKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEA 322

Query: 301 ERSRRELHLALAASRQVAYVFDVQTRCFTWQGDVAGVLGVPTAAAQTLDQVLALVSPLDQ 360
           ERSRRELHLALAASRQVAYVFDVQTRCFTWQGDVAGVLGVPTAAAQTLDQVLALVSPLDQ
Sbjct: 323 ERSRRELHLALAASRQVAYVFDVQTRCFTWQGDVAGVLGVPTAAAQTLDQVLALVSPLDQ 382

Query: 361 ARLRQRWLDGEDPARVVQMPVRLQDGSAVLDRSRPLPRSRDAGPRVGGVWLIDPAD 416
           ARLRQRWLDGEDPARVVQMPVRLQDGSAVLDRSRPLPRSRDAGPRVGGVWLIDPAD
Sbjct: 383 ARLRQRWLDGEDPARVVQMPVRLQDGSAVLDRSRPLPRSRDAGPRVGGVWLIDPAD 438


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,101,264
Number of extensions: 41525
Number of successful extensions: 221
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,203,190
Effective search space: 394646320
Effective search space used: 394646320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)