BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0066.p (534 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311535|ref|YP_003775627.1| L-aspartate oxidase [Herbaspiri... 1088 0.0 gi|300312277|ref|YP_003776369.1| succinate dehydrogenase flavopr... 246 2e-66 >gi|300311535|ref|YP_003775627.1| L-aspartate oxidase [Herbaspirillum seropedicae SmR1] Length = 534 Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 533/534 (99%), Positives = 533/534 (99%) Query: 1 MKCDVAILGSGLAGLSVALHLAEKYQVVVVSKGELLDGASNWAQGGIAAVLDSHDSHAQH 60 MKCDVAILGSGLAGLSVALHLAEKYQVVVVSKGELLDGASNWAQGGIAAVLDSHDSHAQH Sbjct: 1 MKCDVAILGSGLAGLSVALHLAEKYQVVVVSKGELLDGASNWAQGGIAAVLDSHDSHAQH 60 Query: 61 IADTLVAGAGLCDESATRTIVEQGREAIEWLIEQGVPFTRDDSAELGYHLTREGGHSQRR 120 IADTLVAGAGLCDESATRTIVEQGREAIEWLIEQGVPFTRDDSAELGYHLTREGGHSQRR Sbjct: 61 IADTLVAGAGLCDESATRTIVEQGREAIEWLIEQGVPFTRDDSAELGYHLTREGGHSQRR 120 Query: 121 IIHAADATGHAVQVTLEQRVRAHPNITLLEHHCAIDLIHARKLDAKAEPRCLGVHVQDTA 180 IIHAADATGHAVQVTLEQRVRAHPNITLLEHHCAIDLIHARKLDAKAEPRCLGVHVQDTA Sbjct: 121 IIHAADATGHAVQVTLEQRVRAHPNITLLEHHCAIDLIHARKLDAKAEPRCLGVHVQDTA 180 Query: 181 SGKVLAIAAARTVLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEFIQFHPTCL 240 SGKVLAIAAARTVLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEFIQFHPTCL Sbjct: 181 SGKVLAIAAARTVLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEFIQFHPTCL 240 Query: 241 YHPYAKSFLISEALRGEGALLKLPLSAGAAAGQRFMPEHDERAELAPRDVVARAIDFEMK 300 YHPYAKSFLISEALRGEGALLKLPLSAGAAAGQRFMPEHDERAELAPRDVVARAIDFEMK Sbjct: 241 YHPYAKSFLISEALRGEGALLKLPLSAGAAAGQRFMPEHDERAELAPRDVVARAIDFEMK 300 Query: 301 KRGLDHVDLDISHQSPAFIAEHFPTIQARCQEFGIDITRQPIPVVPAAHYTCGGVVTDMA 360 KRGLDHVDLDISHQSPAFIAEHFPTIQARC EFGIDITRQPIPVVPAAHYTCGGVVTDMA Sbjct: 301 KRGLDHVDLDISHQSPAFIAEHFPTIQARCLEFGIDITRQPIPVVPAAHYTCGGVVTDMA 360 Query: 361 GRTDLPGLYAVGETAYTGLHGANRLASNSLLECLVLGRAAAADIEHELAAGSWRVDEVPA 420 GRTDLPGLYAVGETAYTGLHGANRLASNSLLECLVLGRAAAADIEHELAAGSWRVDEVPA Sbjct: 361 GRTDLPGLYAVGETAYTGLHGANRLASNSLLECLVLGRAAAADIEHELAAGSWRVDEVPA 420 Query: 421 WDESRVTDADEEVVIAHNWDELRRFMWNYVSIVRTDKRLERAQHRIRLLKEEIDEYYANF 480 WDESRVTDADEEVVIAHNWDELRRFMWNYVSIVRTDKRLERAQHRIRLLKEEIDEYYANF Sbjct: 421 WDESRVTDADEEVVIAHNWDELRRFMWNYVSIVRTDKRLERAQHRIRLLKEEIDEYYANF 480 Query: 481 RISRDLLELRNLVDVAQLIVSSALMRKESRGLHFSQDYPRTLPRATPTILPGRS 534 RISRDLLELRNLVDVAQLIVSSALMRKESRGLHFSQDYPRTLPRATPTILPGRS Sbjct: 481 RISRDLLELRNLVDVAQLIVSSALMRKESRGLHFSQDYPRTLPRATPTILPGRS 534 >gi|300312277|ref|YP_003776369.1| succinate dehydrogenase flavoprotein subunit [Herbaspirillum seropedicae SmR1] Length = 592 Score = 246 bits (629), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 192/560 (34%), Positives = 288/560 (51%), Gaps = 65/560 (11%) Query: 2 KCDVAILGSGLAGLSVALHLAEK-YQVVVVSKGELLDGASNWAQGGIAAVLD--SHDSHA 58 + D I+G+G +G+ +L LAE V V+SK + AQGGI A L S D+ Sbjct: 12 RFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWY 71 Query: 59 QHIADTLVAGAGLCDESATRTIVEQGREAIEWLIEQGVPFTRDDSAEL-----GYHLTRE 113 H+ DT+ L D+ A + + +A+ L G+PF R+ + G H Sbjct: 72 WHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQRPFGGHTANL 131 Query: 114 GGHSQRRIIHAADATGHAVQVTLEQR-VRAHPNITLLEHHCAIDLIHARKLDAKAEPRCL 172 G +R AAD TGHA+ TL QR VRA + + A+DLI + D L Sbjct: 132 GEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFV--EWMALDLIRNEEGD------VL 183 Query: 173 GVHVQDTASGKVLAIAAARTVLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEF 232 GV + +G+++ + A T+ ATGGAG+++ ++N TGDG+ MA RAG + +MEF Sbjct: 184 GVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEF 243 Query: 233 IQFHPTCLYHPYAKSFLISEALRGEGALLKLPLSAGAAAGQRFMPEHDER-AELAPRDVV 291 QFHPT + LI+E +RGEG +L + G+RFM + +LAPRD V Sbjct: 244 WQFHPTGV---AGAGVLITEGVRGEGGILI------NSNGERFMERYAPTLKDLAPRDFV 294 Query: 292 ARAIDFEMKK-RGL----DHVDLDISHQSPAFIAEHFPTIQARCQEF-GIDITRQPIPVV 345 +R++D E+K+ RG+ DHV LD+ H I + P+I +F +D T++PIPVV Sbjct: 295 SRSMDQEIKEGRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVV 354 Query: 346 PAAHYTCGGVVTDMAGRTDLP----------GLYAVGETAYTGLHGANRLASNSLLECLV 395 P HY GG+ T++ G+ P G+YA+GE A +HGANRL +NSLL+ +V Sbjct: 355 PTIHYQMGGIPTNIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVV 414 Query: 396 LGRAAA--------ADIEHE-LAAGSW--RVDEVPAWDESRVTDADEEVVIAHNWDELRR 444 GRAA D H+ + AG+ ++ + + S ++ ++V +++R Sbjct: 415 FGRAAGNHIVGSRLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVA-----NDIRA 469 Query: 445 FMWNYVSIVRTDKRLERAQHRIRLLKE-----EIDEYYANFRISR-DLLELRNLVDVAQL 498 M Y + RTD L+ +I L E + F +R + LEL NL++ A+ Sbjct: 470 TMQKYCGVFRTDALLQEGYTKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKA 529 Query: 499 IVSSALMRKESRGLHFSQDY 518 ++SA RKESRG H DY Sbjct: 530 TITSAAARKESRGAHAHSDY 549 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,678,792 Number of extensions: 72096 Number of successful extensions: 264 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 256 Number of HSP's successfully gapped: 2 Length of query: 534 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 444 Effective length of database: 1,193,720 Effective search space: 530011680 Effective search space used: 530011680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)