BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0060.p
         (433 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311541|ref|YP_003775633.1| H+/citrate symporter protein [H...   845   0.0  

>gi|300311541|ref|YP_003775633.1| H+/citrate symporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 433

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/433 (99%), Positives = 432/433 (99%)

Query: 1   MLALLGFVTIVSLFTAILTKKMSPLVALIAIPIVAALLGGFGLQTSKFIIQGVTAIAPVA 60
           MLALLGFVTIVSLFTAILTKKMSPLVALIAIPIVAALLGGFGLQTSKFI+QGVTAIAPVA
Sbjct: 1   MLALLGFVTIVSLFTAILTKKMSPLVALIAIPIVAALLGGFGLQTSKFIVQGVTAIAPVA 60

Query: 61  GMFVFAILFFGIVTDAGMLDPIISRILKTVGSRPTRIVPGTALLALLIHLDGSGAVTFLI 120
           GMFVFAILFFGIVTDAGMLDPIISRILKTVGSRPTRIVPGTALLALLIHLDGSGAVTFLI
Sbjct: 61  GMFVFAILFFGIVTDAGMLDPIISRILKTVGSRPTRIVPGTALLALLIHLDGSGAVTFLI 120

Query: 121 TIPAMLPLYTRLGIDKRILACVASMAAGVNFLPWTGPMIRASAALHIPVSDIFTPLIPVQ 180
           TIPAMLPLYTRLGIDKRILACV SMAAGVNFLPWTGPMIRASAALHIPVSDIFTPLIPVQ
Sbjct: 121 TIPAMLPLYTRLGIDKRILACVTSMAAGVNFLPWTGPMIRASAALHIPVSDIFTPLIPVQ 180

Query: 181 LVGLTFVFIASYLLGLKEERRLGLGKGATVDFVQQHELSEAQLKIRRPQNFWANIVLTIF 240
           LVGLTFVFIASYLLGLKEERRLGLGKGATVDFVQQHELSEAQLKIRRPQNFWANIVLTIF
Sbjct: 181 LVGLTFVFIASYLLGLKEERRLGLGKGATVDFVQQHELSEAQLKIRRPQNFWANIVLTIF 240

Query: 241 VLGVMISGKVDPVVMFMIGVVLALMINYRDVTMQRERIDAHAKAALLMASILFAAGVFTG 300
           VLGVMISGKVDPVVMFMIGVVLALMINYRDVTMQRERIDAHAKAALLMASILFAAGVFTG
Sbjct: 241 VLGVMISGKVDPVVMFMIGVVLALMINYRDVTMQRERIDAHAKAALLMASILFAAGVFTG 300

Query: 301 IMTKSGMLSAMAKTAVGLVPPEMASHIPVVLGVLSMPLSLLFDPDSFYFGVLPVIAEVSH 360
           IMTKSGMLSAMAKTAVGLVPPEMASHIPVVLGVLSMPLSLLFDPDSFYFGVLPVIAEVSH
Sbjct: 301 IMTKSGMLSAMAKTAVGLVPPEMASHIPVVLGVLSMPLSLLFDPDSFYFGVLPVIAEVSH 360

Query: 361 MLGVPTIQVAQAALLGQMTTGFPVSPLTPATFLVCGLAGIELADHQKYTIPFLFGASLVM 420
           MLGVPTIQVAQAALLGQMTTGFPVSPLTPATFLVCGLAGIELADHQKYTIPFLFGASLVM
Sbjct: 361 MLGVPTIQVAQAALLGQMTTGFPVSPLTPATFLVCGLAGIELADHQKYTIPFLFGASLVM 420

Query: 421 TIACVVLGLFPLF 433
           TIACVVLGLFPLF
Sbjct: 421 TIACVVLGLFPLF 433


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,225,049
Number of extensions: 51227
Number of successful extensions: 226
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 345
Effective length of database: 1,203,190
Effective search space: 415100550
Effective search space used: 415100550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)