BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0059.p (337 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311542|ref|YP_003775634.1| LysR family transcription regul... 662 0.0 gi|300310792|ref|YP_003774884.1| LysR family transcription regul... 137 1e-33 gi|300311724|ref|YP_003775816.1| LysR family transcription regul... 134 7e-33 gi|300313102|ref|YP_003777194.1| LysR family transcription regul... 98 1e-21 gi|300312482|ref|YP_003776574.1| LysR family transcription regul... 94 1e-20 >gi|300311542|ref|YP_003775634.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/337 (98%), Positives = 331/337 (98%), Gaps = 2/337 (0%) Query: 1 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT 60 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT Sbjct: 1 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT 60 Query: 61 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR 120 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR Sbjct: 61 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR 120 Query: 121 YPGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLA 180 YPGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLA Sbjct: 121 YPGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLA 180 Query: 181 SKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVSHTGLEVEHLATVAALIESGLGV 240 SKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGV HTGLEVEHLATVAALIESGLGV Sbjct: 181 SKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVIHTGLEVEHLATVAALIESGLGV 240 Query: 241 SVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGKAKAETA 300 SVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGKAKAE Sbjct: 241 SVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGKAKAE-- 298 Query: 301 TETEAAVAGKRQESGRRASSPKTKEKGGGQGAGRGRS 337 TETEAAVAGKRQESGRRASSPKTKEK QGAGRGRS Sbjct: 299 TETEAAVAGKRQESGRRASSPKTKEKAPRQGAGRGRS 335 >gi|300310792|ref|YP_003774884.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 151/288 (52%), Gaps = 1/288 (0%) Query: 1 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT 60 M+ NI T LQAF+A+A F AA+ ++Q A S I+ +E A RLF+R TR V+ Sbjct: 1 MRINIETAELQAFIAVARQSSFRAAAEGLFITQPALSRRIENLEQALQERLFDRTTRRVS 60 Query: 61 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR 120 LTP GELF+ A+ ++ ++E A + +A+R+ V +A +PS+A LP VL Y + Sbjct: 61 LTPAGELFLVHAQAVMEELELAVKSVEQRMAQRREHVTVACVPSVANNLLPQVLKRYARS 120 Query: 121 YPGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLA 180 + V V + D + L+ +R G+ D + G E D L + + V H LA Sbjct: 121 HANVRVRIIDESAADVLESVRKGEADFGVNFIGAQEAEIDFAELTRERYLAVMPTHHPLA 180 Query: 181 SKRRIKVPQLAGCEMIHLARSTSVRQHLD-AVLRPGGVSHTGLEVEHLATVAALIESGLG 239 + + LAG +++ ++ S+ R +D A R E H+A +L+ +GLG Sbjct: 181 AHASLNWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQYETNHVAGAISLVAAGLG 240 Query: 240 VSVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGL 287 V+++PEL + +VA P+ +P L R + ++T K R L AA L Sbjct: 241 VALLPELAIRNAPYKGIVARPVTSPVLSRAMGLITLKGRVLKPAAATL 288 >gi|300311724|ref|YP_003775816.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 297 Score = 134 bits (338), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 154/283 (54%), Gaps = 1/283 (0%) Query: 10 LQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVTLTPEGELFV 69 +QAF+A+AD F AA HV+Q+A + ++K+E G L ER TR++ LT G F+ Sbjct: 8 VQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALTEIGRDFL 67 Query: 70 QVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRYPGVTVELF 129 AR+L++++ A ++ + R+G V+IA +P++ +LP +L Y RYP +++ Sbjct: 68 PQARRLLAELAGALVEIRETGIARRGDVSIACVPTVGVQYLPRILQAYSARYPHNRIKIL 127 Query: 130 DAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLASKRRIKVPQ 189 D S + + +V+ + G + E + L D + L+C KDH LA +RRI Q Sbjct: 128 DHASSAVAEAVLRREVEFGIHIAGEHHPELISVALTEDRYVLICPKDHPLARRRRIAWRQ 187 Query: 190 LAGCEMIHLARSTSVRQHLDAVLRPGGVS-HTGLEVEHLATVAALIESGLGVSVVPELTL 248 L +I +S R LD L+ G + + EV+ +T L+ G+GV+VVP+L + Sbjct: 188 LQSYPLIFAGEVSSNRALLDPTLKANGFALRSFYEVQRSSTAVGLVAQGVGVAVVPKLAI 247 Query: 249 FQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELV 291 + P + I L P + R L+++T K LS AAQ L +++ Sbjct: 248 QEGAYPTVRVIELVDPVVSRSLVLITRKAAHLSPAAQALYDMI 290 >gi|300313102|ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 11/247 (4%) Query: 5 ISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVTLTPE 64 I R L F +A+ HFG AA+ H+SQ + I +E GA+LF+R R + LT Sbjct: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTAA 61 Query: 65 GELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRYPGV 124 G+ F + ++ +E A ++S + G + + + S A LP V Y YP V Sbjct: 62 GKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPEV 121 Query: 125 TVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLASKRR 184 + L + + + + K+D+ + + D+ + ++P V +DH+LA ++ Sbjct: 122 DMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAGRQS 181 Query: 185 IKVPQLAGCEMIHLARSTS------VRQHLDAV-LRPGGVSHTGLEVEHLATVAALIESG 237 I +LA I + R + ++QH RP V T L+ T+ L+ G Sbjct: 182 ISAAELAEDAFISIPRMIAPVVYDLIQQHCQLHGFRPRIVLETNLQ----QTIVNLVGEG 237 Query: 238 LGVSVVP 244 LGV++VP Sbjct: 238 LGVALVP 244 >gi|300312482|ref|YP_003776574.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 6/203 (2%) Query: 10 LQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVTLTPEGELFV 69 L+ FL + C A+QR +V+ SA S I +E LFER R + L+ GE+ Sbjct: 11 LRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGMVLSAGGEMLA 70 Query: 70 QVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRYPGVTVELF 129 AR++ + + +D+ R GRV ++A A +LP ++ ++++YPG +LF Sbjct: 71 AHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQKKYPGFVFQLF 130 Query: 130 DAISDQCLDLLRHGKVDIALT---APGPNLLEFDTRPLCSDPFYLVCRKDHKLASKRRIK 186 +R G DI LT P P + +P P L+ RKDH LA R+I Sbjct: 131 VGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQP---GPIALIMRKDHPLARFRQIS 187 Query: 187 VPQLAGCEMIHLARSTSVRQHLD 209 V QL M +T++RQ D Sbjct: 188 VGQLKPYPMALPDPTTTLRQLFD 210 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 932,779 Number of extensions: 37688 Number of successful extensions: 265 Number of sequences better than 1.0e-08: 77 Number of HSP's gapped: 241 Number of HSP's successfully gapped: 77 Length of query: 337 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 251 Effective length of database: 1,212,660 Effective search space: 304377660 Effective search space used: 304377660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)