BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0056.p
         (343 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmi...   691   0.0  
gi|300309933|ref|YP_003774025.1| Fe3+ ABC transporter periplasmi...    74   2e-14

>gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/342 (99%), Positives = 340/342 (99%)

Query: 2   KKTKLFSLFASVIGAGMLFSAQAHAATTLTVYTALEADQIKAYQAAFQKANPDIEIKWVR 61
           +KTKLFSLFASVIGAGMLFSAQAHAATTLTVYTALEADQIKAYQAAF KANPDIEIKWVR
Sbjct: 30  EKTKLFSLFASVIGAGMLFSAQAHAATTLTVYTALEADQIKAYQAAFHKANPDIEIKWVR 89

Query: 62  DSTGIVTAKLLAEKANPQADVIWGLAATSLALLDKEGMLMPYAPQGLSAIDAKYRSAANP 121
           DSTGIVTAKLLAEKANPQADVIWGLAATSLALLDKEGMLMPYAPQGLSAIDAKYRSAANP
Sbjct: 90  DSTGIVTAKLLAEKANPQADVIWGLAATSLALLDKEGMLMPYAPQGLSAIDAKYRSAANP 149

Query: 122 PAWVGMDVWASAICFNTVEAQKQGLPKPTSWADLTKPVYAGKIVMPNPASSGTGYLDVSA 181
           PAWVGMDVWASAICFNTVEAQKQGLPKPTSWADLTKPVYAGKIVMPNPASSGTGYLDVSA
Sbjct: 150 PAWVGMDVWASAICFNTVEAQKQGLPKPTSWADLTKPVYAGKIVMPNPASSGTGYLDVSA 209

Query: 182 WLQMMGEDKGWAYMDALHKNIGQYTHSGSKPCKQAATGEFPIGIAFEYRAVKTKKEGAPI 241
           WLQMMGEDKGWAYMDALHKNIGQYTHSGSKPCKQAATGEFPIGIAFEYRAVKTKKEGAPI
Sbjct: 210 WLQMMGEDKGWAYMDALHKNIGQYTHSGSKPCKQAATGEFPIGIAFEYRAVKTKKEGAPI 269

Query: 242 DVILPSEGLGWDIEATAIVKGSKHLEAAKKLADFSASKEAMALYEKNFAVVAIPGVAKPD 301
           DVILPSEGLGWDIEATAIVKGSKHLEAAKKLADFSASKEAMALYEKNFAVVAIPGVAKPD
Sbjct: 270 DVILPSEGLGWDIEATAIVKGSKHLEAAKKLADFSASKEAMALYEKNFAVVAIPGVAKPD 329

Query: 302 ELLPADYEKRLIKNDFTWASTNRDRILTEWSKRYESKSEKKQ 343
           ELL ADYEKRLIKNDFTWASTNRDRILTEWSKRYESKSEKKQ
Sbjct: 330 ELLSADYEKRLIKNDFTWASTNRDRILTEWSKRYESKSEKKQ 371


>gi|300309933|ref|YP_003774025.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 117/250 (46%), Gaps = 30/250 (12%)

Query: 56  EIKWVRDSTGIVT-----------AKLLAEKANPQADVIWGLAATSLALLDKEGMLMPYA 104
           +IK +++ TG+             A+L AEKA+P AD  +   +  +   +K+ ++  Y 
Sbjct: 42  QIKAIKEKTGVTVPPDNKNSGQALAQLTAEKASPVADFAYLGVSFGIEAKNKD-LVAAYK 100

Query: 105 PQGLSAIDAKYRSAANPPAWVGMDVWASAICFNTVEAQKQGLPKPTSWADLTKPVYAGKI 164
           P   + I    +       W  +      I  N V+A K G P P SWADL KP Y G I
Sbjct: 101 PAHWNDIPNGLKDPDG--YWFTIHSGTMGIMVN-VDALK-GKPVPKSWADLQKPEYKGLI 156

Query: 165 VMPNPASSGTGYLDVSAWLQMMGEDKGWAYMDALHKNIGQYTH-SGSKPC--KQAA---- 217
              +PAS+  GY+   A  Q +G       +D     IG + +   ++P   KQ +    
Sbjct: 157 GYLDPASAFVGYVGAVAINQALG-----GTLDDFSPAIGYFKNLQKNQPIVPKQTSYARL 211

Query: 218 -TGEFPIGIAFEYRAVKTK-KEGAPIDVILPSEGLGWDIEATAIVKGSKHLEAAKKLADF 275
            +GE PI + +++ A + K K+ A +  ++PSEG        A+VK + H   AKK+ DF
Sbjct: 212 ISGEIPILLGYDFDAYRAKYKDHANVAFVIPSEGTVTVPYVVALVKNAPHQAEAKKVLDF 271

Query: 276 SASKEAMALY 285
             S +  A++
Sbjct: 272 LLSDQGQAIW 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,112,614
Number of extensions: 46156
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,212,660
Effective search space: 311653620
Effective search space used: 311653620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)