BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0047.p (215 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbasp... 424 e-120 gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transpo... 198 4e-52 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 171 4e-44 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 142 2e-35 gi|300311701|ref|YP_003775793.1| export system ATP-binding subun... 141 5e-35 >gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 424 bits (1091), Expect = e-120, Method: Compositional matrix adjust. Identities = 215/215 (100%), Positives = 215/215 (100%) Query: 1 LSKHVADASAPAGRLTILDGIDFTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVR 60 LSKHVADASAPAGRLTILDGIDFTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVR Sbjct: 20 LSKHVADASAPAGRLTILDGIDFTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVR 79 Query: 61 LDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRGDARAREKATEM 120 LDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRGDARAREKATEM Sbjct: 80 LDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRGDARAREKATEM 139 Query: 121 LGRVGLGSRLKHSPKYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMF 180 LGRVGLGSRLKHSPKYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMF Sbjct: 140 LGRVGLGSRLKHSPKYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMF 199 Query: 181 ELNRERGSTLVLVTHDNAMAARCQRTITIAAGRLA 215 ELNRERGSTLVLVTHDNAMAARCQRTITIAAGRLA Sbjct: 200 ELNRERGSTLVLVTHDNAMAARCQRTITIAAGRLA 234 >gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 198 bits (503), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 106/198 (53%), Positives = 135/198 (68%), Gaps = 2/198 (1%) Query: 15 LTILDGIDFTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGR 74 + +L +D V G +AIVGASGSGKSTLL LL GLDTPS G+V L G+D +L E R Sbjct: 28 VKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSSGTVSLLGKDFASLGESER 87 Query: 75 ALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRGDARA--REKATEMLGRVGLGSRLKH 132 LR + LGFV+Q LL +AL+NV +PL +R RA +E+A EMLG+VGL R+ H Sbjct: 88 GALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRADAQEQAREMLGKVGLAQRVTH 147 Query: 133 SPKYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMFELNRERGSTLVL 192 P LSGGE+QRVALARA VT P +LADEPTG+LD +T + ELM EL+R G+ V+ Sbjct: 148 VPGELSGGERQRVALARALVTHPACVLADEPTGNLDRSTADRTFELMIELSRTLGTAFVI 207 Query: 193 VTHDNAMAARCQRTITIA 210 VTHD +A RC R + ++ Sbjct: 208 VTHDIELAGRCGRVLRLS 225 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 171 bits (433), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 135/206 (65%), Gaps = 5/206 (2%) Query: 11 PAG--RLTILDGIDFTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYA 68 PAG ++T+L+ ++ + AG +AIVGASGSGKSTL+ +L LD PS GS + G + Sbjct: 16 PAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKPSAGSYLVAGRETGK 75 Query: 69 LDEDGRALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRG--DARAREKATEMLGRVGL 126 LD D A LR+ GF+FQ + LL L+A NV +P G + R++A E+L R+GL Sbjct: 76 LDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQRRQRAGELLARLGL 135 Query: 127 GSRLKHSPKYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMFELNRER 186 R H P LSGG+QQRV++ARA + ++LADEPTG+LD+ +G+ VI+++ EL+ E Sbjct: 136 AERSHHKPGQLSGGQQQRVSIARALMNGGDVILADEPTGALDSHSGQEVIKILKELHAE- 194 Query: 187 GSTLVLVTHDNAMAARCQRTITIAAG 212 G T+++VTHD +A+ QR I I G Sbjct: 195 GHTIIIVTHDMQVASHAQRIIEIKDG 220 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 142 bits (358), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 125/207 (60%), Gaps = 4/207 (1%) Query: 12 AGRLTILDGIDFTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDE 71 AG + L ID +A G+ I+G SG+GKS+LL + L+ P+ G V +D D+ LDE Sbjct: 52 AGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDE 111 Query: 72 DGRALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRGDARAR--EKATEMLGRVGLGSR 129 LR+R +G +FQ F LL +N+ LPL + G RA+ ++ E+L VGL + Sbjct: 112 TQLVALRRR-IGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHELLALVGLQDK 170 Query: 130 LKHSPKYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMFELNRERGST 189 P+ LSGG++QRV +ARA + P +LL DE T +LD T +++++L+ ++NR+ G T Sbjct: 171 ADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGIT 230 Query: 190 LVLVTHDNAMAAR-CQRTITIAAGRLA 215 ++L+TH+ ++ R + + GR+A Sbjct: 231 IILITHEMSVIREIADRVLVLEQGRVA 257 >gi|300311701|ref|YP_003775793.1| export system ATP-binding subunit [Herbaspirillum seropedicae SmR1] Length = 240 Score = 141 bits (355), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 86/205 (41%), Positives = 119/205 (58%), Gaps = 6/205 (2%) Query: 14 RLTILDGIDFTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDG 73 R+ +D + A G L IVG SGSGK+T L +++G+ P G VR++G D++ L ED Sbjct: 30 RVLAIDHACLSAAFGEILFIVGPSGSGKTTFLSIISGILRPDGGVVRVNGVDLWNLPEDQ 89 Query: 74 RALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRG-DAR-AREKATEMLGRVGLGSRLK 131 A R +GFVFQ + L L + ENV +PL L+ D + A A L VGL Sbjct: 90 LADFRLNTIGFVFQDYHLFPRLTSAENVAIPLILKNVDWKSALASANMFLDVVGLKGCGD 149 Query: 132 HSPKYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMFE--LNRERGST 189 P LSGGEQQRVA+ARA V+ PP+L+ DEPT SLD TG +I + E LN R Sbjct: 150 VFPLKLSGGEQQRVAIARAIVSSPPILILDEPTASLDGDTGRMIIAFLREKILNPRR--C 207 Query: 190 LVLVTHDNAMAARCQRTITIAAGRL 214 +++VTHD ++ R + +A G++ Sbjct: 208 ILIVTHDPRISEFADRIVHMADGKV 232 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 605,798 Number of extensions: 23284 Number of successful extensions: 373 Number of sequences better than 1.0e-08: 134 Number of HSP's gapped: 243 Number of HSP's successfully gapped: 149 Length of query: 215 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 134 Effective length of database: 1,236,335 Effective search space: 165668890 Effective search space used: 165668890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)