BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0046.p
         (314 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311553|ref|YP_003775645.1| drug/metabolite transporter (DM...   624   e-180
gi|300313129|ref|YP_003777221.1| drug/metabolite transporter (DM...    71   1e-13

>gi|300311553|ref|YP_003775645.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score =  624 bits (1610), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 313/314 (99%), Positives = 314/314 (100%)

Query: 1   MSSAVLSQLPIARTHKLGILFLISGLWTLSLLDTAGKLLALAGYHVVMIAWMRYTINLFF 60
           MSSAVLSQLPIARTHKLGILFLISGLWTLSLLDTAGKLLALAGYHVVMIAWMRYTINLFF
Sbjct: 1   MSSAVLSQLPIARTHKLGILFLISGLWTLSLLDTAGKLLALAGYHVVMIAWMRYTINLFF 60

Query: 61  MAATLAPLYRRRHGRSILQSNRLGLQLGRGALLLGSTLIFFSVLKIVPLAEGTAMNFCAP 120
           MAATLAPLYRRRHGRSILQSNRLGLQLGRGALLLGSTLIFFSVLKIVPLAEGTAMNFCAP
Sbjct: 61  MAATLAPLYRRRHGRSILQSNRLGLQLGRGALLLGSTLIFFSVLKIVPLAEGTAMNFCAP 120

Query: 121 LIVLAISPWLLGERSYLSRWIAVLVGFTGMLIVIRPSGDIPPYGVALGLISALTQALLSI 180
           LIVLAISPWLLGERSYLSRWIAVLVGFTGMLIVIRPSGDIPPYGVALGLISALTQALLSI
Sbjct: 121 LIVLAISPWLLGERSYLSRWIAVLVGFTGMLIVIRPSGDIPPYGVALGLISALTQALLSI 180

Query: 181 LNRKASQADNPMVTLFYGALVGSVVSTLLVPFFWTSHTPTMVELAILVSTGITSTIGHFL 240
           LNRKASQADNPMVTLFYGALVGSVVSTLLVPFFWTSHTPTMVELAILVSTGITSTIGHFL
Sbjct: 181 LNRKASQADNPMVTLFYGALVGSVVSTLLVPFFWTSHTPTMVELAILVSTGITSTIGHFL 240

Query: 241 QNSAYRHAEASVLTPFFYAQIISACGMGWLVFGQFPDRITVLGIAIICASGIGIAYIEHK 300
           QNSAYRHAEASVLTPFFYAQIISACGMGWLVFGQFPDR+TVLGIAIICASGIGIAYIEHK
Sbjct: 241 QNSAYRHAEASVLTPFFYAQIISACGMGWLVFGQFPDRVTVLGIAIICASGIGIAYIEHK 300

Query: 301 RAHPLPPADPMESV 314
           RAHPLPPADPMESV
Sbjct: 301 RAHPLPPADPMESV 314


>gi|300313129|ref|YP_003777221.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 23/243 (9%)

Query: 89  RGALLLGSTLIFFSVLKIVPLAEGTAMNFCAPL---IVLAISPWLLGERSYLSRW---IA 142
           RG + + S  ++F    ++P+A  T +N+ + +   ++L  + W  G + +   W     
Sbjct: 66  RGGVGVISLWLWFYSFSLLPVATATTLNYMSSIWIAVMLFAAAWWQGNKKF--EWGLAAT 123

Query: 143 VLVGFTGMLIVIRPSGDIPPY-GVALGLISALTQALLSILNRKASQADNPMV-TLFYGAL 200
           V++ F G+ +++RPS D     G A+ L S +  AL+ +  RK      P    +FY +L
Sbjct: 124 VVLSFIGVALLMRPSLDADQLLGGAISLFSGVLSALVYLQVRKLGLLGEPEYRVVFYFSL 183

Query: 201 VGSV------VSTLLVPFFWTSHTPTMVELAILVSTGITSTIGHFLQNSAYRHAEASVLT 254
            G +      V+T  VP  W SH+     L I++  G+T+T+       AYR     V  
Sbjct: 184 TGVLAGLVGSVATGRVPL-WHSHSWQGAALVIMI--GLTATLAQIAMTRAYRLGNTLVTA 240

Query: 255 PFFYAQIISACGMGWLVFGQFPDRITVLGIAIICASGIGIAYIEHKR----AHPLPPADP 310
              Y  I+ +   G LV+   P  +  LG+ +I ASG+   Y  H+     A  LP  DP
Sbjct: 241 NLQYTGIVFSSLFGVLVWNDAPGWLGWLGMGVILASGLLATYHNHRSSQIAARNLPKVDP 300

Query: 311 MES 313
           + +
Sbjct: 301 IAT 303


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 896,875
Number of extensions: 33225
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 2
Length of query: 314
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,217,395
Effective search space: 278783455
Effective search space used: 278783455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)