BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0042.p (1341 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311556|ref|YP_003775648.1| phosphoribosylformylglycinamidi... 2765 0.0 >gi|300311556|ref|YP_003775648.1| phosphoribosylformylglycinamidine synthase [Herbaspirillum seropedicae SmR1] Length = 1341 Score = 2765 bits (7167), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1339/1341 (99%), Positives = 1340/1341 (99%) Query: 1 MLILPGSNALSAFRTQRLLTQLQAVDAAITGVSGRYLHFVDAAQALTQEDEARLNGLLTY 60 MLILPGSNALSAFRTQRLLTQLQAVDAAITGVSGRYLHFVDAAQALTQEDEARLNGLLTY Sbjct: 1 MLILPGSNALSAFRTQRLLTQLQAVDAAITGVSGRYLHFVDAAQALTQEDEARLNGLLTY 60 Query: 61 GDPFNGSDDGETFVVIPRLGTISPWASKATDIVRNCGMAHIHRVERGIIFRVQVKTGLLG 120 GDPFNGSDDGETFVVIPRLGTISPWASKATDIVRNCGMAHIHRVERGIIFRVQVKTGLLG Sbjct: 61 GDPFNGSDDGETFVVIPRLGTISPWASKATDIVRNCGMAHIHRVERGIIFRVQVKTGLLG 120 Query: 121 GAKKLNEASLPGVAALLHDRMTETVLRDPQQASALFSELQAKPLESVDVLGGGRAALERA 180 GAKKLNEASLPGVAALLHDRMTETVLRDPQQASALFSELQAKPLESVDVLGG RAALERA Sbjct: 121 GAKKLNEASLPGVAALLHDRMTETVLRDPQQASALFSELQAKPLESVDVLGGSRAALERA 180 Query: 181 NTELGLALSDDEIDYLVEAFTKAQRNPTDVELMMFAQANSEHCRHKIFNADWTIDGQKQD 240 NTELGLALSDDEIDYLVEAFTKAQRNPTDVELMMFAQANSEHCRHKIFNADWTIDGQKQD Sbjct: 181 NTELGLALSDDEIDYLVEAFTKAQRNPTDVELMMFAQANSEHCRHKIFNADWTIDGQKQD 240 Query: 241 KSLFGMIKNTHQLAPKGTVVAYSDNSSIIEGATVSRFYQRGAIKGNVYEASEELTHILMK 300 KSLFGMIKNTHQLAPKGTVVAYSDNSSIIEGATVSRFYQRGAIKGNVYEASEELTHILMK Sbjct: 241 KSLFGMIKNTHQLAPKGTVVAYSDNSSIIEGATVSRFYQRGAIKGNVYEASEELTHILMK 300 Query: 301 VETHNHPTAISPFPGASTGAGGEIRDEGATGRGSKPKAGLTGFTVSNLMVTHAVQPWENA 360 VETHNHPTAISPFPGASTGAGGEIRDEGATGRGSKPKAGLTGFTVSNLMVTHAVQPWENA Sbjct: 301 VETHNHPTAISPFPGASTGAGGEIRDEGATGRGSKPKAGLTGFTVSNLMVTHAVQPWENA 360 Query: 361 RDVAQPVAERDAHAQGGIYGKPERIASPLQIMIDGPLGGAAFNNEFGRPNLGGYFRTYEQ 420 RDVAQPVAERDAHAQGGIYGKPERIASPLQIMIDGPLGGAAFNNEFGRPNLGGYFRTYEQ Sbjct: 361 RDVAQPVAERDAHAQGGIYGKPERIASPLQIMIDGPLGGAAFNNEFGRPNLGGYFRTYEQ 420 Query: 421 NVGGQVMGYHKPIMIAGGMGNISAKHTKKNDLPVGSLLIQLGGPGMRIGMGGGAASSMAT 480 NVGGQVMGYHKPIMIAGGMGNISAKHTKKNDLPVGSLLIQLGGPGMRIGMGGGAASSMAT Sbjct: 421 NVGGQVMGYHKPIMIAGGMGNISAKHTKKNDLPVGSLLIQLGGPGMRIGMGGGAASSMAT 480 Query: 481 GVNAADLDFDSVQRGNPEMERRAQEVINACWALGDDNPIQSIHDVGAGGLSNAFPEITND 540 GVNAADLDFDSVQRGNPEMERRAQEVINACWALGDDNPIQSIHDVGAGGLSNAFPEITND Sbjct: 481 GVNAADLDFDSVQRGNPEMERRAQEVINACWALGDDNPIQSIHDVGAGGLSNAFPEITND 540 Query: 541 AKRGAIFDLRKVPLEESGLAPREIWSNESQERYVLAILPEHLELFKYLCERERAPFAVVG 600 AKRGAIFDLRKVPLEESGLAPREIWSNESQERYVLAILPEHLELFKYLCERERAPFAVVG Sbjct: 541 AKRGAIFDLRKVPLEESGLAPREIWSNESQERYVLAILPEHLELFKYLCERERAPFAVVG 600 Query: 601 TATEERQLKVIDPEHNNSPVDMPMDVLLGKPPKMHRDVTHVEKQLPPVDLTGMDLVEVAQ 660 TATEERQLKVIDPEHNNSPVDMPMDVLLGKPPKMHRDVTHVEKQLPPVDLTGMDLVEVAQ Sbjct: 601 TATEERQLKVIDPEHNNSPVDMPMDVLLGKPPKMHRDVTHVEKQLPPVDLTGMDLVEVAQ 660 Query: 661 RVLRLPAVADKSFLITIGDRSVGAMTVRDQMVGPWQVPVADVAVTAMGLEGYRGEAMAMG 720 RVLRLPAVADKSFLITIGDRSVGAMTVRDQMVGPWQVPVADVAVTAMGLEGYRGEAMAMG Sbjct: 661 RVLRLPAVADKSFLITIGDRSVGAMTVRDQMVGPWQVPVADVAVTAMGLEGYRGEAMAMG 720 Query: 721 ERTPLAVIDAPASGRMAVGEAITNIAAAPIAEIGDIKLSANWMAACGQPGQDAALFDTVK 780 ERTPLAVIDAPASGRMAVGEAITNIAAAPIAEIGDIKLSANWMAACGQPGQDAALFDTVK Sbjct: 721 ERTPLAVIDAPASGRMAVGEAITNIAAAPIAEIGDIKLSANWMAACGQPGQDAALFDTVK 780 Query: 781 AVGMELCPALGVSIPVGKDSLSMRSTWSDEEGAKSVTSPVSLIVSGFAPVTDVRRVLTPQ 840 AVGMELCPALGVSIPVGKDSLSMRSTWSDEEGAKSVTSPVSLIVSGFAPVTDVRRVLTPQ Sbjct: 781 AVGMELCPALGVSIPVGKDSLSMRSTWSDEEGAKSVTSPVSLIVSGFAPVTDVRRVLTPQ 840 Query: 841 LRKDKGETVLILIDLGRGKNRMGASALTQVMQQIGNETPDVDSADDLKAFFNAIQQLNTE 900 LRKDKGETVLILIDLGRGKNR+GASALTQVMQQIGNETPDVDSADDLKAFFNAIQQLNTE Sbjct: 841 LRKDKGETVLILIDLGRGKNRIGASALTQVMQQIGNETPDVDSADDLKAFFNAIQQLNTE 900 Query: 901 DRLLAYHDRSDGGLYATLAEMAFAGHTGISVNLDILTMEGEHAADWGDSKNWTTQVAERR 960 DRLLAYHDRSDGGLYATLAEMAFAGHTGISVNLDILTMEGEHAADWGDSKNWTTQVAERR Sbjct: 901 DRLLAYHDRSDGGLYATLAEMAFAGHTGISVNLDILTMEGEHAADWGDSKNWTTQVAERR 960 Query: 961 NELTLRALFSEELGAVIQVPAEQKSDVMNVLRSYNLGACSHIIGKPNDRDVIEFMRDAKN 1020 NELTLRALFSEELGAVIQVPAEQKSDVMNVLRSYNLGACSHIIGKPNDRDVIEFMRDAKN Sbjct: 961 NELTLRALFSEELGAVIQVPAEQKSDVMNVLRSYNLGACSHIIGKPNDRDVIEFMRDAKN 1020 Query: 1021 IYSQPRAELHRVWSETSWRIARLRDNPACADAEYDRLLDATDPGMTPKLSFDPQEDIAAP 1080 IYSQPRAELHRVWSETSWRIARLRDNPACADAEYDRLLDATDPGMTPKLSFDPQEDIAAP Sbjct: 1021 IYSQPRAELHRVWSETSWRIARLRDNPACADAEYDRLLDATDPGMTPKLSFDPQEDIAAP 1080 Query: 1081 YLSLGAAARPKVAILREQGVNSHIETAYAMHKAGFTAVDVHMSDLIANRAKLDDFKGFIA 1140 YLSLGAAARPKVAILREQGVNSHIETAYAMHKAGFTAVDVHMSDLIANRAKLDDFKGFIA Sbjct: 1081 YLSLGAAARPKVAILREQGVNSHIETAYAMHKAGFTAVDVHMSDLIANRAKLDDFKGFIA 1140 Query: 1141 VGGFSYGDVLGAGEGWAKTILFNAQLAEQFSRFFQRQDTFSLGICNGCQMMSNLKSMIPG 1200 VGGFSYGDVLGAGEGWAKTILFNAQLAEQFSRFFQRQDTFSLGICNGCQMMSNLKSMIPG Sbjct: 1141 VGGFSYGDVLGAGEGWAKTILFNAQLAEQFSRFFQRQDTFSLGICNGCQMMSNLKSMIPG 1200 Query: 1201 AEAWPKFTRNKSEQFEARFVMVEVADSPSIFMQGMAGTQAPIATAHGEGFADFSQTGDID 1260 AEAWPKFTRNKSEQFEARFVMVEVADSPSIFMQGMAGTQAPIATAHGEGFADFSQTGDID Sbjct: 1201 AEAWPKFTRNKSEQFEARFVMVEVADSPSIFMQGMAGTQAPIATAHGEGFADFSQTGDID 1260 Query: 1261 KAIVAMRYVDHRGAATEAYPFNPNGSPQGITSVTTPDGRFTVLMPHAERVFRTVTQSWHP 1320 KAIVAMRYVDHRGAATEAYPFNPNGSPQGITSVTTPDGRFTVLMPHAERVFRTVTQSWHP Sbjct: 1261 KAIVAMRYVDHRGAATEAYPFNPNGSPQGITSVTTPDGRFTVLMPHAERVFRTVTQSWHP 1320 Query: 1321 ESWGEDSPWMRMFRNARKWVG 1341 ESWGEDSPWMRMFRNARKWVG Sbjct: 1321 ESWGEDSPWMRMFRNARKWVG 1341 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 4,384,750 Number of extensions: 198241 Number of successful extensions: 577 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 575 Number of HSP's successfully gapped: 1 Length of query: 1341 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1244 Effective length of database: 1,160,575 Effective search space: 1443755300 Effective search space used: 1443755300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 137 (57.4 bits)