BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0036.p
         (495 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311562|ref|YP_003775654.1| hypothetical protein Hsero_2247...  1011   0.0  

>gi|300311562|ref|YP_003775654.1| hypothetical protein Hsero_2247
           [Herbaspirillum seropedicae SmR1]
          Length = 495

 Score = 1011 bits (2613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/495 (99%), Positives = 493/495 (99%)

Query: 1   MTLPSPRSYPLPPFGNRFAELPPAFHTRLQPTPLPAPYLVGFSEDAAASIALPRPQADDG 60
           MTLPSPR YPLPPFGNRFAELPPAFHTRLQPTPLPAPYLVGFSEDAAASIALPRPQADDG
Sbjct: 1   MTLPSPRPYPLPPFGNRFAELPPAFHTRLQPTPLPAPYLVGFSEDAAASIALPRPQADDG 60

Query: 61  DFLDIFAGNRIAPGSTPLSAVYSGHQFGVWAGQLGDGRAITLGDLPAADGAGRIELQLKG 120
           DFLDIFAGNRIAPGSTPLSAVYSGHQFGVWAGQLGDGRAITLGDLPAADGAGRIELQLKG
Sbjct: 61  DFLDIFAGNRIAPGSTPLSAVYSGHQFGVWAGQLGDGRAITLGDLPAADGAGRIELQLKG 120

Query: 121 AGPTPYSRMGDGRAVLRSSIREFLCSEAMAALGIPTTRALTVIGSDQRVLRETAETAAVV 180
           AGPTPYSRMGDGRAVLRSSIREFLCSEAMAALGIPTTRALTVIGSDQRVLRETAETAAVV
Sbjct: 121 AGPTPYSRMGDGRAVLRSSIREFLCSEAMAALGIPTTRALTVIGSDQRVLRETAETAAVV 180

Query: 181 TRMAPSFIRFGSFEHWYYNQRFDDLKLLADTVLEQFYPELLQAGNPYAALLKEVTRRTAT 240
           TRMAPSFIRFGSFEHWYYNQRFDDLKLLADTVLEQFYPELLQAGNPYAALLKEVTRRTAT
Sbjct: 181 TRMAPSFIRFGSFEHWYYNQRFDDLKLLADTVLEQFYPELLQAGNPYAALLKEVTRRTAT 240

Query: 241 LMAQWQAVGFMHGVMNTDNMSILGLTLDYGPFGFMEAFDARHICNHTDSQGRYSYQMQPR 300
           LMAQWQAVGFMHGVMNTDNMSILGLTLDYGPFGFMEAFDARHICNHTDSQGRYSYQMQPR
Sbjct: 241 LMAQWQAVGFMHGVMNTDNMSILGLTLDYGPFGFMEAFDARHICNHTDSQGRYSYQMQPR 300

Query: 301 IGQWNCFALGQAMLPLIGTVEETEAALADYEAIFQAQHEALLRAKLGLRTRQPEDEQLIE 360
           IGQWNCFALGQAMLPLIGTVEETEAALADYEAIFQAQHEALLRAKLGLRTRQPEDEQLIE
Sbjct: 301 IGQWNCFALGQAMLPLIGTVEETEAALADYEAIFQAQHEALLRAKLGLRTRQPEDEQLIE 360

Query: 361 AMFAILQANHVDFTLFFRRLGDLQISNAAHDEGLRDLILDRPAFDAWATQYRARLRAEDS 420
           AMFAILQANHVDFTLFFRRLGDLQI NAAHDEGLRDLILDRPAFDAWATQYRARLRAEDS
Sbjct: 361 AMFAILQANHVDFTLFFRRLGDLQIGNAAHDEGLRDLILDRPAFDAWATQYRARLRAEDS 420

Query: 421 DDQARRLAMHAVNPKYVLRNYLAQVAIERAQQKDFSEVARLQSILRHPFDEQPEHDKYAD 480
           DDQARRLAMHAVNPKYVLRNYLAQVAIERAQQKDFSEVARLQSILRHPFDEQPEHDKYAD
Sbjct: 421 DDQARRLAMHAVNPKYVLRNYLAQVAIERAQQKDFSEVARLQSILRHPFDEQPEHDKYAD 480

Query: 481 LPPDWASHLEVSCSS 495
           LPPDWASHLEVSCSS
Sbjct: 481 LPPDWASHLEVSCSS 495


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,674,065
Number of extensions: 75019
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 406
Effective length of database: 1,198,455
Effective search space: 486572730
Effective search space used: 486572730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)