BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0034.p (402 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311564|ref|YP_003775656.1| branched-chain amino acid ABC t... 781 0.0 gi|300312953|ref|YP_003777045.1| amino acid ABC transporter perm... 112 5e-26 gi|300314069|ref|YP_003778161.1| amino acid ABC transporter perm... 107 2e-24 gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC t... 106 4e-24 gi|300313997|ref|YP_003778089.1| urea transport system, permease... 77 3e-15 >gi|300311564|ref|YP_003775656.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 404 Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/402 (100%), Positives = 402/402 (100%) Query: 1 MKRLLLPWLGFALVLLAAPLVFPQSAALSLLSQMGTMVLLCLSYNMLLGEGGMLSFGHAV 60 MKRLLLPWLGFALVLLAAPLVFPQSAALSLLSQMGTMVLLCLSYNMLLGEGGMLSFGHAV Sbjct: 3 MKRLLLPWLGFALVLLAAPLVFPQSAALSLLSQMGTMVLLCLSYNMLLGEGGMLSFGHAV 62 Query: 61 YSGLGAFGAIHLMNRMAEGALAFPMTLVPLAGGLTGALCGVLLGYLTTRRAGTTFAMITL 120 YSGLGAFGAIHLMNRMAEGALAFPMTLVPLAGGLTGALCGVLLGYLTTRRAGTTFAMITL Sbjct: 63 YSGLGAFGAIHLMNRMAEGALAFPMTLVPLAGGLTGALCGVLLGYLTTRRAGTTFAMITL 122 Query: 121 GLVELVSACVLMFPEVFGGEGGISGNRVIGEPVLGISYGPQIQVYYLIAGWLLVCAIAIW 180 GLVELVSACVLMFPEVFGGEGGISGNRVIGEPVLGISYGPQIQVYYLIAGWLLVCAIAIW Sbjct: 123 GLVELVSACVLMFPEVFGGEGGISGNRVIGEPVLGISYGPQIQVYYLIAGWLLVCAIAIW 182 Query: 181 ALRATPLGRILNAVRDNPERAAFIGYDPQRVRYLALILSAFFAGVSGGLSAINFEIVSAE 240 ALRATPLGRILNAVRDNPERAAFIGYDPQRVRYLALILSAFFAGVSGGLSAINFEIVSAE Sbjct: 183 ALRATPLGRILNAVRDNPERAAFIGYDPQRVRYLALILSAFFAGVSGGLSAINFEIVSAE 242 Query: 241 YVGALRSGAILLFTFIGGSAYFYGPIVGGVVGVLFSSWLSAYTQAWQFYLGAFFILIVMT 300 YVGALRSGAILLFTFIGGSAYFYGPIVGGVVGVLFSSWLSAYTQAWQFYLGAFFILIVMT Sbjct: 243 YVGALRSGAILLFTFIGGSAYFYGPIVGGVVGVLFSSWLSAYTQAWQFYLGAFFILIVMT 302 Query: 301 APGGLASLIDQGWRILRSGAFDTRMAVRATAWLAAALPVLAGLVLATEMAYQASLGSLAE 360 APGGLASLIDQGWRILRSGAFDTRMAVRATAWLAAALPVLAGLVLATEMAYQASLGSLAE Sbjct: 303 APGGLASLIDQGWRILRSGAFDTRMAVRATAWLAAALPVLAGLVLATEMAYQASLGSLAE 362 Query: 361 APLRWWGWTVDVHAPLPWMTALLLMSGGVAALCCWRRQGGRS 402 APLRWWGWTVDVHAPLPWMTALLLMSGGVAALCCWRRQGGRS Sbjct: 363 APLRWWGWTVDVHAPLPWMTALLLMSGGVAALCCWRRQGGRS 404 >gi|300312953|ref|YP_003777045.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 317 Score = 112 bits (280), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 154/294 (52%), Gaps = 12/294 (4%) Query: 28 LSLLSQMGTMVLLCLSYNMLLGEGGMLSFGHAVYSGLGAFGAIHLMNRMAEGALAFPMTL 87 + +L+++ ++ S N +LG GGM+SFGHAV+ GLGA+ + +A L Sbjct: 29 IGVLTRILIFAMVAASLNFILGYGGMVSFGHAVFFGLGAY-----VTAIASFHGVTSAWL 83 Query: 88 VPLAGGLTGALCGVLLGYLTTRRAGTTFAMITLGLVELVSACVLMFPEVFGGEGGISGNR 147 + L L AL G+++G + R F MIT+ L +L + F +GG+ G+ + Sbjct: 84 IWLLAALVTALVGLVIGVIALRTRAVYFIMITMALAQLFYYFFVGF-RYYGGDDGL---Q 139 Query: 148 VIGEPVLG--ISYGPQIQVYYLIAGWLLVCAIAIWALRATPLGRILNAVRDNPERAAFIG 205 V P+LG + Y+++ WL I + L A+ G LNA+R N RA IG Sbjct: 140 VTARPLLGFGLDMSGDNAFYWVVLAWLAASFILLQRLLASRFGLALNAIRQNERRAQAIG 199 Query: 206 YDPQRVRYLALILSAFFAGVSGGLSAINFEIVSAEYVGALRSGAILLFTFIGGSAYFYGP 265 Y R + A +++A AG++G L ++ S + + +SG +L+ +GG YFYG Sbjct: 200 YPALRYKLAAFVIAAVIAGIAGSLIGMSNLFASPKLLHWSQSGILLVMVALGGVGYFYGG 259 Query: 266 IVGGVVGVLFSSWLSAYTQAWQFYLGAFFILIVMTAPGGLASLIDQGWRILRSG 319 ++G +L LS + + WQ Y+G +L+VM AP G++SL+ G + L+ G Sbjct: 260 LLGAAAFLLLEEVLSTHFEYWQIYVGLILLLVVMVAPRGVSSLVSIG-KTLKQG 312 >gi|300314069|ref|YP_003778161.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 326 Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/266 (32%), Positives = 135/266 (50%), Gaps = 24/266 (9%) Query: 31 LSQMGTMVLLCLSYNMLLGEGGMLSFGHAVYSGLGAFGAIHLMNRMAEGALAFPMTLVPL 90 L +M L ++N+L+G G+LSFGHA + G + M A P L + Sbjct: 26 LMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGY-----MCGQALKVWGLPTELGLI 80 Query: 91 AGGLTGALCGVLLGYLTTRRAGTTFAMITLGLVELVSACVLMFPEVFGGEGGISGNRVIG 150 G LTGAL G+++G L RR G F MITL L +++ L P GGE G+ G V Sbjct: 81 IGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFT-GGEDGLQG--VPR 137 Query: 151 EPVLG-ISYGPQIQVYYLIAGWLLVCAIAIWALRA----TPLGRILNAVRDNPERAAFIG 205 +LG ++ + +YY++ L A+A +AL +P G++L A+++N RA +G Sbjct: 138 GKLLGFLNLESDMTLYYVV----LAIAVAGFALIVRTIHSPFGQVLKAIKENEPRAISLG 193 Query: 206 YDPQRVRYLALILSAFFAGVSGGLSAINFEIVSAEYVGALRSGAILLFTFIGGSAYFYGP 265 YD R + LA +LSA +G++G + + V SG ++L T +GG GP Sbjct: 194 YDVARYKLLAFVLSAGLSGLAGATKTLVLGFETLTDVHWSMSGLVVLMTLVGGLGTILGP 253 Query: 266 IVGGVVGVLFSS-------WLSAYTQ 284 IVG V+ ++ + WL++ T Sbjct: 254 IVGAVIIIMLENKLGDIGAWLASVTH 279 >gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 628 Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 126/261 (48%), Gaps = 17/261 (6%) Query: 30 LLSQMGTMVLLCLSYNMLLGEGGMLSFGHAVYSGLGAFGAIHLMNRMAEGALAFPMTLVP 89 L+ ++ VL S + L+G GGM+SFGHA Y GLGA+ A + R L +PM L Sbjct: 350 LMVEILVAVLFAASLHFLMGPGGMVSFGHAAYFGLGAYAAALVTLR-----LQWPMPLAM 404 Query: 90 LAGGLTGALCGVLLGYLTTRRAGTTFAMITLGLVELVSACVLMFPEVFGGEGGISGNRVI 149 LAG T L +L G+ R +G AM+TL ++V A + + ++ GG G+ G R Sbjct: 405 LAGAGTAMLAALLFGWFCVRLSGVYLAMLTLAFAQIVWAAIYQWDDLTGGSNGLVGLRTA 464 Query: 150 GEPVLGISYGPQIQVYYLIAGWLLVCAIAIWALR---ATPLGRILNAVRDNPERAAFIGY 206 ++Y YYL LL A+ ++ LR P G L A RD RA +G Sbjct: 465 AALASPLAY------YYLA---LLCSALGVYLLRRVIHAPFGLALRAARDASGRAQALGM 515 Query: 207 DPQRVRYLALILSAFFAGVSGGLSAINFEIVSAEYVGALRSGAILLFTFIGGSAYFYGPI 266 D + +++ L+ F G++G L A + +S E G RS L+ +GG GP+ Sbjct: 516 DVRALQWGGFALAGLFCGLAGVLFAFSKGSISPEVAGVNRSVDGLVMVLLGGVQSLAGPL 575 Query: 267 VGGVVGVLFSSWLSAYTQAWQ 287 +G V ++ T W+ Sbjct: 576 LGASVFTWLQDLVARETDYWR 596 >gi|300313997|ref|YP_003778089.1| urea transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 376 Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 87/328 (26%), Positives = 140/328 (42%), Gaps = 39/328 (11%) Query: 20 LVFPQSAALSLLSQMGTMV--LLC-----LSYNMLLGEGGMLSFGHAVYSGLGAFG-AIH 71 L+FP +AL + S +V +C L+ +++ G G+LS GH V+ LG + ++ Sbjct: 34 LLFPAGSALHVSSYTVALVGKFMCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMY 93 Query: 72 LMNRMAEGAL---------------AFP----MT----LVPLAGGLTGALCGVLLGYLT- 107 LM + + A+P MT L L L + GY Sbjct: 94 LMRAIGRDGVYQSDLPDFMVFLNWKAYPWYWWMTDHFWFAMLLVVLVPGLLAFVFGYFAF 153 Query: 108 -TRRAGTTFAMITLGLVELVSACVLMFPEVFGGEGGISG-NRVIGEPVLGISYGPQIQVY 165 +R G F++IT + FGG G + R++G I+ V Sbjct: 154 RSRIKGVYFSIITQAMTFAFMLLFFRNDTGFGGNNGFTDFKRILG---FTITAPATKAVL 210 Query: 166 YLIAGWLLVCAIAIWALRAT-PLGRILNAVRDNPERAAFIGYDPQRVRYLALILSAFFAG 224 YL+ LL A+ + + T LGR+L VRD+ R FIGY+P + LSA G Sbjct: 211 YLVTLGLLFGALVLCRMIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVICG 270 Query: 225 VSGGLSAINFEIVSAEYVGALRSGAILLFTFIGGSAYFYGPIVGGVVGVLFSSWLS-AYT 283 ++G L I++ + S ++++ +GG GPI+G SW + A+ Sbjct: 271 IAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRGTLIGPIIGAFTVNGLKSWFTAAFP 330 Query: 284 QAWQFYLGAFFILIVMTAPGGLASLIDQ 311 W + LG FIL+ + P G+ L+ + Sbjct: 331 DLWLYALGLIFILVTLFLPQGILGLVQK 358 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.142 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,316,995 Number of extensions: 58529 Number of successful extensions: 367 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 337 Number of HSP's successfully gapped: 20 Length of query: 402 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 315 Effective length of database: 1,207,925 Effective search space: 380496375 Effective search space used: 380496375 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)