BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0033.p (252 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC t... 501 e-143 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 181 4e-47 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 167 9e-43 gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPa... 166 1e-42 gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC t... 152 3e-38 >gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 252 Score = 501 bits (1291), Expect = e-143, Method: Compositional matrix adjust. Identities = 249/252 (98%), Positives = 251/252 (99%) Query: 1 MIAAVALSLQGLHKAFDGSPILRGVDLELLAGERCALIGPNGAGKSSLFHLVSGRYRADA 60 MIAAVALSLQGLHKAFDGSPILRGVDLEL AGERCALIGPNGAGKSSLFHLVSGRYRADA Sbjct: 1 MIAAVALSLQGLHKAFDGSPILRGVDLELRAGERCALIGPNGAGKSSLFHLVSGRYRADA 60 Query: 61 GRVTLHGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRI 120 GR+TLHGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRR+ Sbjct: 61 GRITLHGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRM 120 Query: 121 GGSHEASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGM 180 GGSHEASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGM Sbjct: 121 GGSHEASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGM 180 Query: 181 SRAESAAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANED 240 SRAESAAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANED Sbjct: 181 SRAESAAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANED 240 Query: 241 VQALYLDRRRHG 252 VQALYLDRRRHG Sbjct: 241 VQALYLDRRRHG 252 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 181 bits (460), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 145/242 (59%) Query: 5 VALSLQGLHKAFDGSPILRGVDLELLAGERCALIGPNGAGKSSLFHLVSGRYRADAGRVT 64 V L + L K F G + V+L++ G ALIGPNGAGK++ F+L++ +G++ Sbjct: 4 VILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQIL 63 Query: 65 LHGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRIGGSH 124 +G DIT +P QI R G+ RSFQI+++FP +S ENVR L LG + FW+ Sbjct: 64 FNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGESLK 123 Query: 125 EASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAE 184 + RA+ +L++V L + A +L Y +RALE+A T+A + ++LLDEPT GM + Sbjct: 124 QLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHED 183 Query: 185 SAAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANEDVQAL 244 + ALI++V+ G+T+LMVEH+M V+ + DRI+V+ G ++A + + N V Sbjct: 184 VDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVMEA 243 Query: 245 YL 246 Y+ Sbjct: 244 YM 245 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 167 bits (422), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 96/248 (38%), Positives = 143/248 (57%), Gaps = 6/248 (2%) Query: 7 LSLQGLHKAFDGSPILRGVDLELLAGERCALIGPNGAGKSSLFHLVSGRYRADAGRVTLH 66 L L + K F G +L+GV+ + GE LIGPNGAGK+++F+L++G RA +G + + Sbjct: 3 LQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRFN 62 Query: 67 GVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYA-FWRRIGG--- 122 DI +P +I G+AR+FQ +F ++ ENV + L Y A +GG Sbjct: 63 DDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFRN 122 Query: 123 -SHEASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMS 181 EA RAL +L V L +A + A LSY EQR LE A +A ++LLDEP AGM+ Sbjct: 123 AEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGMN 182 Query: 182 RAESAAMVALIREVTM-GKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANED 240 AE +++ I + G T+ M+EHDM+ V L +RIAV++ G++IA T +I+ N++ Sbjct: 183 PAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQE 242 Query: 241 VQALYLDR 248 V YL + Sbjct: 243 VIEAYLGK 250 >gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 166 bits (421), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 103/244 (42%), Positives = 146/244 (59%) Query: 3 AAVALSLQGLHKAFDGSPILRGVDLELLAGERCALIGPNGAGKSSLFHLVSGRYRADAGR 62 AA+AL ++GL K + G R VDLE+ AG+ A+IGPNGAGK++L L+SG ADAG Sbjct: 6 AALALVVKGLKKNYGGLAATRDVDLEIAAGQVHAIIGPNGAGKTTLLSLLSGALAADAGE 65 Query: 63 VTLHGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRIGG 122 + L G + + Q GL RSFQITS+F LS EN++ A+ Y F+ G Sbjct: 66 IHLFGQPMHGHAEQARVAAGLVRSFQITSVFDELSVLENLQVAVQRGQHRSYGFFHASAG 125 Query: 123 SHEASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSR 182 A A+TV ++VGL + +LS+ +R L++ + IA V+L+DEP AGM Sbjct: 126 DRAAREAAMTVARRVGLEKVVHQLSSQLSHGARRRLDVGLAIACSPRVLLMDEPMAGMGH 185 Query: 183 AESAAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANEDVQ 242 ES M+ALI+ + T+++VEHDM+ VF LADR+ V+ G V+A + IRAN +V+ Sbjct: 186 EESGDMIALIQSLKEELTVVLVEHDMEAVFALADRMTVLVQGAVLATGSVDEIRANAEVK 245 Query: 243 ALYL 246 YL Sbjct: 246 LAYL 249 >gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 152 bits (383), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 95/243 (39%), Positives = 144/243 (59%), Gaps = 6/243 (2%) Query: 7 LSLQGLHKAFDGSPILRGVDLELLAGERCALIGPNGAGKSSLFHLVSGRYRADAGRVTLH 66 L +Q L K+F G L + L AG+ ALIGPNGAGKS+ F+L++G+ R D G V L Sbjct: 4 LQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEVLLD 63 Query: 67 GVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRIGGSHEA 126 G IT ++I R G+ R+FQ+++ F ++ ++V+ ALL + WR Sbjct: 64 GQSITGLDARRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRRLWQLWRPADSLFR- 122 Query: 127 SARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAESA 186 +A+ +L QVG+AA+A A L+Y + + +ELA+ ++ ++L+DEPTAGM+ E Sbjct: 123 -QQAMELLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEPTAGMATQERQ 181 Query: 187 AMVALIREVT--MGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPR-IRANEDVQA 243 A++AL R + G +L EH M VVF ADRI V+ G+++A D AP +RA+ V+ Sbjct: 182 ALMALTRRLVNERGIAVLFTEHSMDVVFAHADRILVLARGQLVA-DGAPAVVRADARVRE 240 Query: 244 LYL 246 LY Sbjct: 241 LYF 243 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 761,278 Number of extensions: 31328 Number of successful extensions: 600 Number of sequences better than 1.0e-08: 126 Number of HSP's gapped: 370 Number of HSP's successfully gapped: 138 Length of query: 252 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 169 Effective length of database: 1,226,865 Effective search space: 207340185 Effective search space used: 207340185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)