BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0032.p (238 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 463 e-132 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 203 8e-54 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 185 2e-48 gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [He... 180 8e-47 gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPa... 180 1e-46 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 463 bits (1191), Expect = e-132, Method: Compositional matrix adjust. Identities = 233/238 (97%), Positives = 234/238 (98%) Query: 1 MDKASLLLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGTGRSTLLKALMGLLPSR 60 MDK SLLLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNG GRSTLLKALMGLLPSR Sbjct: 1 MDKTSLLLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLPSR 60 Query: 61 GDCRFEGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRSWCEDD 120 GDCRFEGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGR WCEDD Sbjct: 61 GDCRFEGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRGWCEDD 120 Query: 121 IHALFPALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVAQA 180 IHALFPALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVA+A Sbjct: 121 IHALFPALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARA 180 Query: 181 LQELRTRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPAGLSAQETVQREWLAL 238 LQELRTRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTP GLSAQETVQREWLAL Sbjct: 181 LQELRTRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSAQETVQREWLAL 238 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 203 bits (517), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 112/228 (49%), Positives = 147/228 (64%), Gaps = 3/228 (1%) Query: 4 ASLLLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGTGRSTLLKALMGLLPSR-GD 62 + LL V GL Y + +L G+DL ++ GE+V+++GRNG G+ST LKALMGLL R G Sbjct: 2 SQCLLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQ 61 Query: 63 CRFEGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGR-SWCEDDI 121 R GRDI L H ARLG+GYVPE R +F LSV +NL GR+P P+PG W + Sbjct: 62 IRLAGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQP-PRPGAPHWTPQAL 120 Query: 122 HALFPALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVAQAL 181 LFP L Q +SGGEQQML + R L+GNP LLL+DEP+EG+AP +VEQ+A + Sbjct: 121 FELFPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMI 180 Query: 182 QELRTRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPAGLSAQE 229 QEL+ G+A+LL EQ A + R Y++ +G +V GTPA L A + Sbjct: 181 QELKRSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQ 228 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 185 bits (470), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 93/234 (39%), Positives = 155/234 (66%), Gaps = 5/234 (2%) Query: 6 LLLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGTGRSTLLKALMGLLPS-RGDCR 64 ++L V + YG S +L GV L V GE+V++LGRNG G++T LK+++G++P +G Sbjct: 1 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVL 60 Query: 65 FEGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRSWCEDDIHAL 124 FEG+ ISGLP++ IA G+ VPE R +F L+V +NL + + +W ++I+A+ Sbjct: 61 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKES----AWGLEEIYAI 116 Query: 125 FPALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVAQALQEL 184 FP L +RR+ LSGGEQQMLA+ RAL+ +P +L++DEP EGLAP +V+++ ++++ Sbjct: 117 FPRLKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQI 176 Query: 185 RTRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPAGLSAQETVQREWLAL 238 + G++++LVEQ + +L+ R Y++ +G +V+ G+ A A E V+ +L + Sbjct: 177 KATGMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGV 230 >gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 232 Score = 180 bits (457), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 141/226 (62%), Gaps = 2/226 (0%) Query: 7 LLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGTGRSTLLKALMGLLP-SRGDCRF 65 +L V L YG + L GV L VQ+G+++S+LGRNG G++TLLK LMG+LP ++G+ F Sbjct: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 Query: 66 EGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRSWCEDDIHALF 125 EG DI+ L H A+LG+ YVP+ RE+F L+V +N+L+G S + +++ LF Sbjct: 61 EGHDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASSIKGEVYELF 120 Query: 126 PALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVAQALQELR 185 P L + LSGG+QQ LA+ RALL P L+++DEPTEG+ P +++ + + + LR Sbjct: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 Query: 186 TRG-VAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPAGLSAQET 230 RG + +LL EQ A EL+ VM RGE+V GT + ++ Sbjct: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDV 226 >gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 180 bits (456), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 98/237 (41%), Positives = 148/237 (62%), Gaps = 5/237 (2%) Query: 5 SLLLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGTGRSTLLKALMGL-LPSRGDC 63 S LL V GL GYG S+VL G+D+ V+ GE+V++LGRNG G++T L+ ++GL P+ G Sbjct: 2 SALLEVEGLTGGYGASQVLFGIDMQVREGEVVTLLGRNGMGKTTTLRTILGLNRPTGGVV 61 Query: 64 RFEGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNL--LLGRKPGPQPGRSWCEDDI 121 RF G I AIAR GM VPE R++F LSV +NL R+ G W + I Sbjct: 62 RFRGEAIHSASADAIARRGMAIVPEGRQIFKNLSVEENLSAFAARRNGRD--NPWTLEKI 119 Query: 122 HALFPALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVAQAL 181 + FP L +RR LSGGEQQMLA+GRAL+ NP LL++DE TEGLAP + E++ L Sbjct: 120 YQQFPRLKERRHNGGGQLSGGEQQMLAIGRALMTNPHLLILDEATEGLAPLVREEIWSCL 179 Query: 182 QELRTRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPAGLSAQETVQREWLAL 238 + LR G+ ++++++ + + + ++ +G++V++G A LS Q + ++L++ Sbjct: 180 KALREYGLTIIVIDKYIKRLIGFADQHTILEKGKVVWQGDSAQLSVQTELWDQYLSV 236 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 829,236 Number of extensions: 38031 Number of successful extensions: 541 Number of sequences better than 1.0e-08: 125 Number of HSP's gapped: 357 Number of HSP's successfully gapped: 139 Length of query: 238 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 156 Effective length of database: 1,231,600 Effective search space: 192129600 Effective search space used: 192129600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)