BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0025.p (258 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 523 e-150 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 117 1e-27 gi|300313520|ref|YP_003777612.1| transcription regulator protein... 103 1e-23 gi|300313885|ref|YP_003777977.1| GntR family transcription regul... 99 5e-22 gi|300312626|ref|YP_003776718.1| GntR family transcription regul... 87 2e-18 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 523 bits (1346), Expect = e-150, Method: Compositional matrix adjust. Identities = 256/258 (99%), Positives = 257/258 (99%) Query: 1 MPNTSKPARPGASSDILNLAAAGLGPVRPERFAERVYETLFHAIVEGRITVGSKLPSEND 60 MPNTSKPAR GASSDILNLAAAGLGPVRPERFAERVYETLFHAIVEGRITVGSKLPSEND Sbjct: 1 MPNTSKPARAGASSDILNLAAAGLGPVRPERFAERVYETLFHAIVEGRITVGSKLPSEND 60 Query: 61 LATLFEVSRPVVRQALDRLREDQLVESLRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNG 120 LATLFEVSRPVVRQALDRLREDQLVESLRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNG Sbjct: 61 LATLFEVSRPVVRQALDRLREDQLVESLRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNG 120 Query: 121 LELRLVIEPECAAMAALRRNRQDLDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATG 180 LELRLVIEPECAAMAALRRNRQDLDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATG Sbjct: 121 LELRLVIEPECAAMAALRRNRQDLDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATG 180 Query: 181 NLRFVQVMKTLEYDVSHAVNMLRHLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAM 240 NLRFVQVMKTLEYDVSHAVNMLRHLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAM Sbjct: 181 NLRFVQVMKTLEYDVSHAVNMLRHLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAM 240 Query: 241 RGHIDNARTRMFNSRPGL 258 RGHI+NARTRMFNSRPGL Sbjct: 241 RGHIENARTRMFNSRPGL 258 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 117 bits (292), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 120/232 (51%), Gaps = 15/232 (6%) Query: 28 RPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVES 87 +P+ ++ V L I G +T G KLP+E+++ VSR VVR+A+ RL+ LVE+ Sbjct: 16 KPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVET 75 Query: 88 LRGSGTYVKE--KPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLD 145 G GT+V E K G P R ++ LELR+ +E E A +AA RR + L Sbjct: 76 RHGIGTFVLEAKKGGNINIDPATITTMR--DLLALLELRISLETETAGLAAARRTEEQLQ 133 Query: 146 RMERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLRHL 205 + L+ F A + GG DF FH AIA ATGN F++++ L V + R Sbjct: 134 EIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGV-----IPRKR 188 Query: 206 MHIAPWKRSQDA--MD----EHRQIFELIRVQDAEGARRAMRGHIDNARTRM 251 ++ A Q A +D EH I+E I DAE AR AMR H+ N+R R+ Sbjct: 189 INTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 103 bits (258), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 112/221 (50%), Gaps = 3/221 (1%) Query: 32 FAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVESLRGS 91 ++ V L I G GSKLP+E LA F VSR VVR+A+ RL+ + +VE +GS Sbjct: 10 LSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGS 69 Query: 92 GTYVKEKPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLDRMERLL 151 G +V E+ G+ P + + ++ +ELR IE E AA AA RR+ +DL +E L Sbjct: 70 GVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEAAL 129 Query: 152 EGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLRHLMHIAPW 211 GG D FH A+A AT N F++ ++ L + A + R + A + Sbjct: 130 AQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVTRG--NEARY 187 Query: 212 KR-SQDAMDEHRQIFELIRVQDAEGARRAMRGHIDNARTRM 251 + S+ +EH I E IR D AR A + H+ NA R+ Sbjct: 188 EDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRL 228 >gi|300313885|ref|YP_003777977.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 98.6 bits (244), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 106/227 (46%), Gaps = 16/227 (7%) Query: 33 AERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVESLRGSG 92 +E + + AI+ G + KLP+E +LA +E SR VR+AL RLR + +V S RGSG Sbjct: 20 SEHICRQIIAAILRGELGENRKLPTEVELAQRYEASRTTVREALSRLRSEGIVVSRRGSG 79 Query: 93 TYVKEKPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLDRMERLLE 152 YV+ P L+ G+ I + R +E A +AA R +D+ M L+ Sbjct: 80 NYVQRLPTLSS--QGSPQIASIHDVERYYAFRECVEVGAAGIAATARQDEDVQAMRIALQ 137 Query: 153 GFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLRHLMHIAP-- 210 + A G D H AIA AT N F+ ++ HA+ +R M +A Sbjct: 138 ALQRAQLEGQTGVDEDLALHMAIARATRNPFFISTIE-------HALGPIRQCMELAQNL 190 Query: 211 -----WKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIDNARTRMF 252 +R Q DEH+ I + I A AMR HI +AR R+F Sbjct: 191 GSPQDGERIQTIDDEHQAIIQAIAEGSPARAEAAMRAHIGHARLRIF 237 >gi|300312626|ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 109/229 (47%), Gaps = 15/229 (6%) Query: 27 VRPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVE 86 + P+R ++ + L IVEG VGS+LPSE DLA VSRP +R+AL L + +E Sbjct: 6 IEPQRLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIE 65 Query: 87 SLRGSGTYVKEKPGLAPAQPGAEPETRI--GHIMNGLEL---RLVIEPECAAMAALRRNR 141 GSG YV P + E RI LEL R +IE E A AA ++ Sbjct: 66 VRMGSGIYVC---------PPVQRERRIDLSSEEGPLELIRAREMIEGEVAYAAAQHGSK 116 Query: 142 QDLDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNM 201 Q + +E + + G D FH +A ATGN V ++ L +D Sbjct: 117 QQIAAVEEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQL-FDARLGPLF 175 Query: 202 LRHLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIDNARTR 250 R H + Q+A+DEH + E +R ++ E AR AMR H+D A TR Sbjct: 176 KRLHSHFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDIAFTR 224 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 819,072 Number of extensions: 33718 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 12 Length of query: 258 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 175 Effective length of database: 1,226,865 Effective search space: 214701375 Effective search space used: 214701375 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)