BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0019.p
         (248 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311575|ref|YP_003775667.1| hypothetical protein Hsero_2260...   479   e-137

>gi|300311575|ref|YP_003775667.1| hypothetical protein Hsero_2260
           [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score =  479 bits (1233), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 248/248 (100%), Positives = 248/248 (100%)

Query: 1   MLSPSSPARTPETIHPALWLASQLARGNGRGVSSGFEALDAELPGRGWPTGVLIELLLPQ 60
           MLSPSSPARTPETIHPALWLASQLARGNGRGVSSGFEALDAELPGRGWPTGVLIELLLPQ
Sbjct: 40  MLSPSSPARTPETIHPALWLASQLARGNGRGVSSGFEALDAELPGRGWPTGVLIELLLPQ 99

Query: 61  DGVGELRLLRPLLAQPQRLRPGAPSGRIALLQAPHAINAPGWAAMGVPATRLLQLQADTP 120
           DGVGELRLLRPLLAQPQRLRPGAPSGRIALLQAPHAINAPGWAAMGVPATRLLQLQADTP
Sbjct: 100 DGVGELRLLRPLLAQPQRLRPGAPSGRIALLQAPHAINAPGWAAMGVPATRLLQLQADTP 159

Query: 121 VDACWAAEQVLRADSCQALLMWQARLRKGDHDLLRRLHVAAQAGQTLFFMLRPLACAREA 180
           VDACWAAEQVLRADSCQALLMWQARLRKGDHDLLRRLHVAAQAGQTLFFMLRPLACAREA
Sbjct: 160 VDACWAAEQVLRADSCQALLMWQARLRKGDHDLLRRLHVAAQAGQTLFFMLRPLACAREA 219

Query: 181 SPAPLRLTLRPAPGGLDIGFLKRRGPLREHSLFLPLTPSPNLQRHVSPVDRRTPATAAAG 240
           SPAPLRLTLRPAPGGLDIGFLKRRGPLREHSLFLPLTPSPNLQRHVSPVDRRTPATAAAG
Sbjct: 220 SPAPLRLTLRPAPGGLDIGFLKRRGPLREHSLFLPLTPSPNLQRHVSPVDRRTPATAAAG 279

Query: 241 SLPSELAG 248
           SLPSELAG
Sbjct: 280 SLPSELAG 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 823,711
Number of extensions: 33860
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,226,865
Effective search space: 202432725
Effective search space used: 202432725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)