BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0017.p
         (450 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311577|ref|YP_003775669.1| hypothetical protein Hsero_2262...   924   0.0  

>gi|300311577|ref|YP_003775669.1| hypothetical protein Hsero_2262
           [Herbaspirillum seropedicae SmR1]
          Length = 501

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/450 (99%), Positives = 449/450 (99%)

Query: 1   LVGHLEFALRHEGVNLEVIDAAFASAEITPAALVAQWQAKPTGEHIRRACFLWEWLTGDE 60
           LVGHLEFALRHEGVNLEVIDAAFASAEITPAAL+AQWQAKPTGEHIRRACFLWEWLTGDE
Sbjct: 52  LVGHLEFALRHEGVNLEVIDAAFASAEITPAALIAQWQAKPTGEHIRRACFLWEWLTGDE 111

Query: 61  LQVAALPNGGYVDLFPEDIYYTAAQPVRSPKFRIRNNALGTPAFCPVVRRSVMSCTPPLE 120
           LQVAALPNGGYVDLFPEDIYYTAAQPVRSPKFRIRNNALGTPAFCPVVRRSVMSCTPPLE
Sbjct: 112 LQVAALPNGGYVDLFPEDIYYTAAQPVRSPKFRIRNNALGTPAFCPVVRRSVMSCTPPLE 171

Query: 121 ELLKEARHALEALEDPELYRRAVAYLYLSETRSSYAIESETPSFNKQERFVQLLQRAGEP 180
           ELLKEARHALEALEDPELYRRAVAYLYLSETRSSYAIESETPSFNKQERFVQLLQRAGEP
Sbjct: 172 ELLKEARHALEALEDPELYRRAVAYLYLSETRSSYAIESETPSFNKQERFVQLLQRAGEP 231

Query: 181 VEVNEQWLVGLQNAIVRDVYSQEASYRHQQNWLEDASGRVSFFPAPAEDLEYVMRGWEDF 240
           VEVNEQWLVGLQNAIVRDVYSQEASYRHQQNWLEDASGRVSFFPAPAEDLEYVMRGWEDF
Sbjct: 232 VEVNEQWLVGLQNAIVRDVYSQEASYRHQQNWLEDASGRVSFFPAPAEDLEYVMRGWEDF 291

Query: 241 VNDTRRCTDLLVKTACAAFGFVYLHPFLDGNGRLHRFLIQHVLARSTLMAPGTLVPVSAV 300
           VNDTRRCTDLLVKTACAAFGFVYLHPFLDGNGRLHRFLIQHVLARSTLMAPGTLVPVSAV
Sbjct: 292 VNDTRRCTDLLVKTACAAFGFVYLHPFLDGNGRLHRFLIQHVLARSTLMAPGTLVPVSAV 351

Query: 301 IEKNIPAYGELLTAFSRPVTALWDYRRGDQEPIVISHPGSRAYRFLRADREVAFLHDMVR 360
           IEKNIPAY ELLTAFSRPVTALWDYRRGDQEPIVISHPGSRAYRFLRADREVAFLHDMVR
Sbjct: 352 IEKNIPAYSELLTAFSRPVTALWDYRRGDQEPIVISHPGSRAYRFLRADREVAFLHDMVR 411

Query: 361 QAVREEIPQELAYLKGYDAAFSELNDELDLPQKDLSALIRMIQSNRGRLSAHRRKQYGHL 420
           QAVREEIPQELAYLKGYDAAFSELNDELDLPQKDLSALIRMIQSNRGRLSAHRRKQYGHL
Sbjct: 412 QAVREEIPQELAYLKGYDAAFSELNDELDLPQKDLSALIRMIQSNRGRLSAHRRKQYGHL 471

Query: 421 PAHVLDRIEEVVGRSFQTTTDPPAPLKAAD 450
           PAHVLDRIEEVVGRSFQTTTDPPAPLKAAD
Sbjct: 472 PAHVLDRIEEVVGRSFQTTTDPPAPLKAAD 501


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,491,403
Number of extensions: 63787
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 362
Effective length of database: 1,203,190
Effective search space: 435554780
Effective search space used: 435554780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)