BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0008.p
         (242 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311582|ref|YP_003775674.1| intracellular protease/amidase ...   489   e-140
gi|300312374|ref|YP_003776466.1| intracellular protease/amidase ...    80   2e-16

>gi|300311582|ref|YP_003775674.1| intracellular protease/amidase
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  489 bits (1260), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/242 (99%), Positives = 241/242 (99%)

Query: 1   MSNRYHQLKVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVS 60
           MSNRYHQLKVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVS
Sbjct: 1   MSNRYHQLKVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVS 60

Query: 61  VDGSLDNASADDYSAVLLPGGVVNGDAMRLLPQARNFVRAANDAEKPIASICHGGWLLIS 120
           VDGSLDNASADDYSAVLLPGGVVNGDAMRLLPQARNFVRAANDAEKPIASICHGGWLLIS
Sbjct: 61  VDGSLDNASADDYSAVLLPGGVVNGDAMRLLPQARNFVRAANDAEKPIASICHGGWLLIS 120

Query: 121 AGIAKGRTVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKPADIPAFNNEFMKLLDEQ 180
           AGIAKGRTVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKPADIPAFNNEFMKLLDEQ
Sbjct: 121 AGIAKGRTVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKPADIPAFNNEFMKLLDEQ 180

Query: 181 QRREHRQPPSSAAGDEAVTDAGGEAATAAPPLSAKGRAPAAPPSHENEAFAVAHGEAPQS 240
           QRREHRQPPSSAAGDEAVTDAGGEAATAAP LSAKGRAPAAPPSHENEAFAVAHGEAPQS
Sbjct: 181 QRREHRQPPSSAAGDEAVTDAGGEAATAAPSLSAKGRAPAAPPSHENEAFAVAHGEAPQS 240

Query: 241 DG 242
           DG
Sbjct: 241 DG 242


>gi|300312374|ref|YP_003776466.1| intracellular protease/amidase
           [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 100/184 (54%), Gaps = 16/184 (8%)

Query: 9   KVAVLVTDGFEQAELLEPKKALEAAGATVHILS------DK-SDSVQGFK----HVDK-G 56
           K+ +L  D  E  E + P +AL+  G TVH +       DK   ++  F+    + +K G
Sbjct: 7   KILLLTGDFAEDYETMVPFQALQMVGHTVHAVCPGKKAGDKVKTAIHDFEGDQTYTEKPG 66

Query: 57  EVVSVDGSLDNASADDYSAVLLPGGVVNGDAMRLLPQARNFVRAANDAEKPIASICHGGW 116
              +++ S D+ SA  Y A+++ GG    + +RL P+    V+A   A+KPIA++CHG  
Sbjct: 67  HQFALNASFDDVSAAGYDALVVAGGRAP-EYLRLNPKVIELVQAFAKADKPIAAVCHGPQ 125

Query: 117 LLISAGIAKGRTVTSWPSLQDDFKNAGSQWVDQEV---VRDENFVSSRKPADIPAFNNEF 173
           +L +AG+ +G+ V+++P+   + K AG Q+ D  V   + D   V++      PA+  +F
Sbjct: 126 VLAAAGVLEGKKVSAYPACAPEVKLAGGQFADIAVDAAITDGKLVTAPAWPAHPAWLAQF 185

Query: 174 MKLL 177
           +++L
Sbjct: 186 LQVL 189


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.128    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 815,087
Number of extensions: 35091
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 2
Length of query: 242
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,226,865
Effective search space: 195071535
Effective search space used: 195071535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)