BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0033.p (634 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 1275 0.0 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 286 5e-78 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 259 4e-70 gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 254 1e-68 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 246 5e-66 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 1275 bits (3299), Expect = 0.0, Method: Compositional matrix adjust. Identities = 630/634 (99%), Positives = 630/634 (99%) Query: 1 MRRYPNSSSSPQAPIQRQRGDWEVVRTLLPYLWTYKWRVLLALAFLVGAKLANVGVPLVL 60 MRRYPNSSSSPQAPIQRQRGDWEVVRTLLPYLWTYKWRVLLALAFLVGAKLANVGVPLVL Sbjct: 1 MRRYPNSSSSPQAPIQRQRGDWEVVRTLLPYLWTYKWRVLLALAFLVGAKLANVGVPLVL 60 Query: 61 KRLVDAMTITPTHPQALLVLPLGLLVAYGALRLATALFTELRELMFARVTQRAVRTIALQ 120 KRLVDAMTITPTHPQALLVLPLGLLVAYGALRLATALFTELRELMFARVTQRAVRTIALQ Sbjct: 61 KRLVDAMTITPTHPQALLVLPLGLLVAYGALRLATALFTELRELMFARVTQRAVRTIALQ 120 Query: 121 VFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSLVSYTLFSILPTLIEIALVLAYLITH 180 VFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSLVSYTLFSILPTLIEIALVLAYLITH Sbjct: 121 VFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSLVSYTLFSILPTLIEIALVLAYLITH 180 Query: 181 YDVWFSVITAGALVCYILFTITVTEWRTHFRRTMNELDSHANTRAIDSLLNYETVKYFGN 240 YDVWFSVITAGALVCYILFTITVTEWRTHFRRTMNELDSHANTRAIDSLLNYETVKYFGN Sbjct: 181 YDVWFSVITAGALVCYILFTITVTEWRTHFRRTMNELDSHANTRAIDSLLNYETVKYFGN 240 Query: 241 EEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIAIAVTLILWRATVGVIDGSMTLG 300 EEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIAIAVTLILWRATVGVIDGSMTLG Sbjct: 241 EEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIAIAVTLILWRATVGVIDGSMTLG 300 Query: 301 DMVLVNAFMIQLYIPLNFLGVLYREIKQSLADMERLFSLLEEHREVADSADAKPLKTQGA 360 DMVLVNAFMIQLYIPLNFLGVLYREIKQSLADMERLFSLLEEHREVADSADAKPLKTQGA Sbjct: 301 DMVLVNAFMIQLYIPLNFLGVLYREIKQSLADMERLFSLLEEHREVADSADAKPLKTQGA 360 Query: 361 NLHFDHVDFSYERNRQILFDVDFTVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIR 420 NLHFDHVDFSYERNRQILFDVDFTVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIR Sbjct: 361 NLHFDHVDFSYERNRQILFDVDFTVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIR 420 Query: 421 IDDQDLRTVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDF 480 ID QDLRTVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDF Sbjct: 421 IDGQDLRTVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDF 480 Query: 481 IESLPDGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQ 540 IESLPDGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQ Sbjct: 481 IESLPDGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQ 540 Query: 541 LEEIARERTTLVIAHRLSTIVNAHQILVLDHGRIVERGTHAGLLMAGGLYAQMWLRQQAG 600 LEEIARERTTLVIAHRLSTIVNA QILVLDHGRIVERGTHAGLLMAGGLYAQMWLRQQAG Sbjct: 541 LEEIARERTTLVIAHRLSTIVNAQQILVLDHGRIVERGTHAGLLMAGGLYAQMWLRQQAG 600 Query: 601 ADEEGGSTAPPLEAVAAPAEPGAEPSVMLPAQQR 634 ADEEGGS AP LEAVAAPAEPGAEPSVMLPAQQR Sbjct: 601 ADEEGGSPAPLLEAVAAPAEPGAEPSVMLPAQQR 634 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 286 bits (731), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 193/575 (33%), Positives = 319/575 (55%), Gaps = 26/575 (4%) Query: 36 KWRVLLALAFLVGAKLANVGV--PLVLKRLVDAMTITPTHPQALLVLPLGLLVAYGALRL 93 K+R LA L+ L +G+ P+ + ++D + + L V+ +GL+ A + Sbjct: 158 KYRKTLAEVLLISLVLQLIGLITPMFFQVVMDKVLVNHAM-MTLNVIAVGLIAAT----V 212 Query: 94 ATALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGVS 153 A+ T +R +FA + + + ++F HL +L L + R+ G I R R + Sbjct: 213 FEAVLTGIRTAIFANASSKIDVELGSRLFSHLLSLPLSYFQVRRAGD---SIAR-VRELE 268 Query: 154 SLVSYTLFSILPTLIEIALVLAYL--ITHYDVWFSVITAGALVCYILFTITVTEWRTHFR 211 ++ S+ + + +++I +L + Y V S+I ++ Y+L ++ T R Sbjct: 269 NIRSFLTGNAMTLVLDIMFSFVFLGVMLWYSVSLSLIVLASIPVYVLLSLVFTPL---LR 325 Query: 212 RTMNE-LDSHANTRA--IDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSLSL 268 +N+ + A ++ +++L +TVK E +++D+ L Y A + + +++SL Sbjct: 326 ERLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPRWQQKWDKQLAAYVAAGLTT-TNISL 384 Query: 269 LNTGQSAIIAIAVTL-ILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYREIK 327 L +G +++ VT+ I+W + V+ M++G++V N Q+ P+ L L+ + + Sbjct: 385 LASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELVAFNMLAGQVASPILRLAQLWNDFQ 444 Query: 328 QSLADMERLFSLLEEHREVADSADAKPLKTQGANLHFDHVDFSYE-RNRQILFDVDFTVQ 386 Q M RL +L+ EVA + P + GA + FD V F Y +++ + ++ Sbjct: 445 QIGISMSRLADVLDARTEVAGNRTRLP-RVNGA-ISFDLVSFRYRPETPEVIRGLSLQIR 502 Query: 387 AGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDDQDLRTVTQASLRQAIGIVPQDTV 446 G +VG SGSGKSTL++L+ R Y + G I +D QD+ + ASLRQ IG+V Q+ Sbjct: 503 PGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQDIAIIDTASLRQQIGVVLQENT 562 Query: 447 LFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPDGYASMVGERGLKLSGGEKQR 506 LF+ +I NIA P EQI+ AAK A HDFI LP+GY +MVGE+G LSGG++QR Sbjct: 563 LFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDFICELPEGYDTMVGEQGSGLSGGQRQR 622 Query: 507 VAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNAHQI 566 +AIAR L+ +P ILIFDEATSALD +E+ IQ + +I RT L+IAHRLS + +A +I Sbjct: 623 IAIARALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRI 682 Query: 567 LVLDHGRIVERGTHAGLL-MAGGLYAQMWLRQQAG 600 +V++ GR+ E G+H L+ + GG+YA + R QAG Sbjct: 683 IVMERGRVAESGSHDELIDLPGGIYAHLH-RLQAG 716 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 259 bits (662), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 209/612 (34%), Positives = 320/612 (52%), Gaps = 43/612 (7%) Query: 4 YPNSSSSPQAPIQRQRGDWEVVRTLLPYLWTYKWRVLLALAFLVGAKLANVGVPLVLKRL 63 +P + +P R+ +R LLP+L YK + LLA LV A A + VP K++ Sbjct: 16 HPADDHAADSPTARKSA-LAALRGLLPFLAPYKKQFLLAGLALVVAAAATLAVPYAFKQM 74 Query: 64 VD-----AMTITPTHPQALLVLPLGLLVAYGALRLATALFTELRELMFARVTQRAVRTIA 118 +D A + + +H + G+ G + T LR M + + +R + Sbjct: 75 IDLGFGAAGSKSASHINLYFLALFGVACILG-------VATALRFYMVSWLGERVTADLR 127 Query: 119 LQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSLVSYTL-FSILPTLIEIA-LVLAY 176 V+ H+ S F +TG + + T + +LV ++ ++ L+ I + + + Sbjct: 128 SAVYAHVVTQSPEFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFIGGMSMLF 187 Query: 177 LITHYDVWFSVITAGALVCYILFTITVTEWRTHFRRTMNELDSHANTRAIDS------LL 230 + ++ A+V I+F + R + +L + R D+ +L Sbjct: 188 FTSARLTSIIIVMLAAVVLPIVF----------YGRRVRKLSRASQDRVADASAMAGEIL 237 Query: 231 N-YETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIAIAVTLILWRAT 289 N TV+ F +EE EARR+ + ++R A++ + SLL ++ A+ +LW Sbjct: 238 NAMPTVQAFTHEEIEARRFAQSVERAFGTAMERVRARSLLTVVAILLVFGAIVFVLWLGA 297 Query: 290 VGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYR---EIKQSLADMERLFSLLEEHREV 346 V++GSM+ G++ F++ + LG L + +++ ERL LL H V Sbjct: 298 HAVMEGSMSGGEL---GQFILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAHSPV 354 Query: 347 AD---SADAKPLKTQGANLHFDHVDFSYER--NRQILFDVDFTVQAGTTTAVVGHSGSGK 401 P GA L VDF Y L + TVQ G T A+VG SG+GK Sbjct: 355 QSVLLPEKLPPRTANGAALTVQGVDFHYPSRPGHPSLTQLSLTVQPGETVAIVGPSGAGK 414 Query: 402 STLSRLLYRFYDVDAGAIRIDDQDLRTVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKP 461 +TL +LL RFYD G I +D D+R + +LR AIGIVPQDTV+F+ NI +G+P Sbjct: 415 TTLFQLLLRFYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRP 474 Query: 462 GATREQIVAAAKAAYIHDFIESLPDGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILI 521 A+ +++AAA+ A H+FIE LP YA +GERG++LSGG++QR+AIAR LLK+P +L+ Sbjct: 475 EASDAEVIAAAQMAAAHEFIERLPGSYACFLGERGVRLSGGQRQRIAIARALLKNPPLLL 534 Query: 522 FDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNAHQILVLDHGRIVERGTHA 581 DEATSALD+ +E+ +Q LE RTTLVIAHRL+T+ A +I+VL+HGRIVE GTHA Sbjct: 535 LDEATSALDAESERLVQGALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHA 594 Query: 582 GLLMAGGLYAQM 593 L+ GLYA + Sbjct: 595 ELVARDGLYAGL 606 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 254 bits (650), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 158/402 (39%), Positives = 226/402 (56%), Gaps = 23/402 (5%) Query: 215 NELDSHA--NTRAIDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQ----SSLSL 268 N+ D+ + R D+ N TVK F + EA Y R V Q S + Sbjct: 211 NQADARSLMTGRITDAYTNIATVKLFSHAGREAD-YARSAMREFLVTVNQQMRLVSGFEV 269 Query: 269 LNTGQSAII---AIAVTLILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYRE 325 +N + ++ A V+L LW G + +G + A ++L +++ Sbjct: 270 VNHLLNMVLIIGATGVSLYLW------TQGKVGVGAVAASTAMALRLNGIAHWVMWEMSS 323 Query: 326 IKQSLADMERLFSLLEEHREVADSADAKPLKTQGANLHFDHVDFSY--ERNRQILFDVDF 383 + + + ++ + L +V D+ DA+PLK L F+ V FSY R ++ +D Sbjct: 324 LFEHVGTVQDGINTLARAHDVKDAPDAQPLKVSQGELRFEGVSFSYGGAAPRPVVDKLDL 383 Query: 384 TVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDDQDLRTVTQASLRQAIGIVPQ 443 ++ G +VG SG+GKST+ LL RFYD++ G I ID QD+ VTQ SLR IG+V Q Sbjct: 384 VIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQ 443 Query: 444 DTVLFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPD-----GYASMVGERGLK 498 DT L + ++ NI YG+P A+ ++ AA+ A HDFI +L D GY + VGERG+K Sbjct: 444 DTSLLHRSVRENITYGRPDASDAEMTHAAERAEAHDFIGTLADAKGRTGYDAHVGERGVK 503 Query: 499 LSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLS 558 LSGG++QR+AIAR +LKD IL+ DEATSALDS E AIQ L ++ +T + IAHRLS Sbjct: 504 LSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLS 563 Query: 559 TIVNAHQILVLDHGRIVERGTHAGLLMAGGLYAQMWLRQQAG 600 TI +++VLD GRIVE+G+HA LL A GLYA++W Q G Sbjct: 564 TIAAMDRLIVLDQGRIVEQGSHAELLAANGLYARLWSHQSGG 605 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 246 bits (627), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 173/500 (34%), Positives = 273/500 (54%), Gaps = 10/500 (2%) Query: 102 RELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSLVSYTLF 161 R + A V++R + + HL LS + ++TG + I T + +S L Sbjct: 246 RTYILALVSERIGADLRTTTYSHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLL 305 Query: 162 SILPTLIEIALVLAYLITHYDVWFSVITAGALVCYILFTITVTEWRTHFRRTMNELD--- 218 ++ I + A LI+ + W +++T L +I + I V R R ++D Sbjct: 306 DFAIDVLMIIMTAAILIS-INPWLALVTLLPL-PFIAWMIHVV--RDRLRHGFEKIDRIW 361 Query: 219 SHANTRAIDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIA 278 S D++ VK F E+ E R+ E + + SL + + Sbjct: 362 SEVTNVLADTIPGIRVVKAFAQEKREVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTE 421 Query: 279 IAVTLILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYREIKQSLADMERLFS 338 + + ++ V +T+G + A++ + Y L+ + + +++ A +R+F Sbjct: 422 VGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFD 481 Query: 339 LLEEHREVADSADAKPL-KTQGANLHFDHVDFSYERNRQILFDVDFTVQAGTTTAVVGHS 397 +L+ V + A+ L K QGA + ++ F Y NR ++ ++ ++ G +VGHS Sbjct: 482 ILDHVSSVPEPANPVHLEKVQGA-IEVRNIGFRYG-NRAVIRNMSLSIAPGEMIGLVGHS 539 Query: 398 GSGKSTLSRLLYRFYDVDAGAIRIDDQDLRTVTQASLRQAIGIVPQDTVLFNDTIEYNIA 457 GSGKST+ L+ RFYDV GAIRID D+R++ + R+ IG+V Q+ LF TI NIA Sbjct: 540 GSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIA 599 Query: 458 YGKPGATREQIVAAAKAAYIHDFIESLPDGYASMVGERGLKLSGGEKQRVAIARTLLKDP 517 YGKP ATRE+I+AAA+AA+ H+FI LP GY S+VGERG LSGGE+QR++IAR LL DP Sbjct: 600 YGKPEATREEIIAAARAAHAHEFILRLPQGYDSLVGERGQALSGGERQRISIARALLIDP 659 Query: 518 AILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNAHQILVLDHGRIVER 577 ILI DEATS++D+ E+ IQ+ L+ + + RTT+ IAHRLST+ A +++VLD G++VE Sbjct: 660 RILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVEV 719 Query: 578 GTHAGLLMAGGLYAQMWLRQ 597 G H L+ G Y +++ Q Sbjct: 720 GNHEELMAREGHYYKLYQAQ 739 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,697,778 Number of extensions: 63470 Number of successful extensions: 578 Number of sequences better than 1.0e-08: 111 Number of HSP's gapped: 483 Number of HSP's successfully gapped: 118 Length of query: 634 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 543 Effective length of database: 1,188,985 Effective search space: 645618855 Effective search space used: 645618855 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)