BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0032.p (331 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313153|ref|YP_003777245.1| transcription regulator protein... 685 0.0 gi|300313854|ref|YP_003777946.1| LysR family transcription regul... 292 2e-80 gi|300312961|ref|YP_003777053.1| transcription regulator protein... 81 1e-16 gi|300310637|ref|YP_003774729.1| LysR family transcription regul... 80 3e-16 gi|300311571|ref|YP_003775663.1| LysR family transcription regul... 69 5e-13 >gi|300313153|ref|YP_003777245.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/331 (99%), Positives = 331/331 (100%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA Sbjct: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGSI 120 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFG+I Sbjct: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGAI 120 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLTMGTETLRPYSRCDRN 180 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLTMGTETLRPYSRCDRN Sbjct: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLTMGTETLRPYSRCDRN 180 Query: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLDKHYETDMSESLKMMAL 240 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLDKHYETDMSESLKMMAL Sbjct: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLDKHYETDMSESLKMMAL 240 Query: 241 EGHGVAFLPESSVVREVRNRQLARTDVPSGEWEVEMEIRLYRERPTAQRAGKALVARLWE 300 EGHGVAFLPESSVVREVRNRQLARTDVPSGEWEVEMEIRLYRERPTAQRAGKALVARLWE Sbjct: 241 EGHGVAFLPESSVVREVRNRQLARTDVPSGEWEVEMEIRLYRERPTAQRAGKALVARLWE 300 Query: 301 YLVELDAQRQEGGKGSARTSGGKAGRAAEKG 331 YLVELDAQRQEGGKGSARTSGGKAGRAAEKG Sbjct: 301 YLVELDAQRQEGGKGSARTSGGKAGRAAEKG 331 >gi|300313854|ref|YP_003777946.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 292 bits (748), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 154/309 (49%), Positives = 203/309 (65%), Gaps = 11/309 (3%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 ME KW+EDF+S+ ET +FSRSA+LR+VTQPAF RRI+SLE WLG +L DR+SYP LT A Sbjct: 1 MEIKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTQA 60 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGSI 120 GE F A ML Q R +LRG+ AQ+ + A+PHTL LT PK LS +E G+I Sbjct: 61 GESFVPIAKEMLNQSMQARLVLRGQLAGAQSAVRLAMPHTLLLTVFPKLLSEIEKSIGAI 120 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLTMGTETLRPYSRCDRN 180 +T ++A NVHDAVM +VE CDLLLCY H +Q + LD+ RYD+L++G E LRPY + N Sbjct: 121 STTVMAGNVHDAVMALVERNCDLLLCYDHRQQGIALDTERYDVLSLGKEPLRPYVKTLPN 180 Query: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLDKHYETDMSESLKMMAL 240 G P YV PG+ P PFLSY+ + L R+VE + + R +HL + +ETD++E LK MA+ Sbjct: 181 GLPKYVLPGAPNDPQPFLSYSPYSSLSRIVEKALHSSPRQVHLFRRFETDLAEGLKSMAV 240 Query: 241 EGHGVAFLPESSVVREVRNRQLARTDVPS-------GEWEVEMEIRLYRERPTAQRAGKA 293 EGHG+A+LP S+V RE+ +L P+ G W EM+IR+YR A Sbjct: 241 EGHGIAWLPASAVAREIAEGKLTLAIAPTDSEALEQGLWCDEMDIRVYRRLDGANPD--- 297 Query: 294 LVARLWEYL 302 + R+W YL Sbjct: 298 -IDRIWNYL 305 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/90 (46%), Positives = 59/90 (65%), Gaps = 4/90 (4%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 ME + L+ F ++A T SFSR+AEL H+ QP SR+I+ LE LG +LIDR S P LT A Sbjct: 1 MELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 Query: 61 GEVFYEQAVAMLGQINN----TRALLRGKR 86 G+ FYEQ + +L ++ TR + RG++ Sbjct: 61 GKFFYEQTLQVLSRLEQIEEGTRVIARGRQ 90 >gi|300310637|ref|YP_003774729.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 16/151 (10%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 M+ + L+ FV++A TR+F+R++E H+ QP SR+IQ LE LG L+ R S P RLT A Sbjct: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTY--------MPKWLSA 112 G VFYEQA+ +L +++ + A I TLS+ + +P + Sbjct: 61 GRVFYEQALQILNRLDQLK--------NATQQIGLNQRQTLSIGFVASTLYGGLPMLVRK 112 Query: 113 LESGFGSINTRLIALNVHDAVMTIVEGGCDL 143 L + ++ +L+ L + G D+ Sbjct: 113 LRQHYPEVDIQLLELTSMQQFAALKSGRIDV 143 >gi|300311571|ref|YP_003775663.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 68.9 bits (167), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 66/124 (53%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 ME + L FV++ + S SR+A H+ QPA +++I+ LE L L+ R++ T A Sbjct: 1 MELRQLRYFVAIVDHGSLSRAARALHIAQPALTQQIRQLEDELAAQLLHRSAQGVIATDA 60 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGSI 120 G+VFYE A+A+L Q+ + + + T+ +P ++S L+A+ S + I Sbjct: 61 GKVFYEHALAILKQVQDAKQAVGQSADKPSGTVALGIPQSVSNALALPLLNAVRSTYPEI 120 Query: 121 NTRL 124 +L Sbjct: 121 TLQL 124 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,038,391 Number of extensions: 41543 Number of successful extensions: 200 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 15 Length of query: 331 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 245 Effective length of database: 1,212,660 Effective search space: 297101700 Effective search space used: 297101700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)