BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0028.p (249 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313150|ref|YP_003777242.1| glutamate/aspartate ABC transpo... 498 e-142 gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transpo... 231 5e-62 gi|300313536|ref|YP_003777628.1| amino acid ABC transporter perm... 98 6e-22 gi|300312812|ref|YP_003776904.1| glutamate/aspartate ABC transpo... 90 2e-19 gi|300313611|ref|YP_003777703.1| amino acid ABC transporter perm... 89 2e-19 >gi|300313150|ref|YP_003777242.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 249 Score = 498 bits (1283), Expect = e-142, Method: Compositional matrix adjust. Identities = 249/249 (100%), Positives = 249/249 (100%) Query: 1 MHYNWNWGIFWEMSPDGIPYIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWV 60 MHYNWNWGIFWEMSPDGIPYIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWV Sbjct: 1 MHYNWNWGIFWEMSPDGIPYIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWV 60 Query: 61 VRIANGYVELFRNIPLLVQMFLWYFVMPELLPAFIGDWIKSLPDASFVTATLALGFFTSS 120 VRIANGYVELFRNIPLLVQMFLWYFVMPELLPAFIGDWIKSLPDASFVTATLALGFFTSS Sbjct: 61 VRIANGYVELFRNIPLLVQMFLWYFVMPELLPAFIGDWIKSLPDASFVTATLALGFFTSS 120 Query: 121 RVAVQVTTGIQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSS 180 RVAVQVTTGIQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSS Sbjct: 121 RVAVQVTTGIQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSS 180 Query: 181 VALTIGLVELTAATYSMREFTFQTFEALTGATIIYVIISVIALFMARLLEKVTAVPGYIT 240 VALTIGLVELTAATYSMREFTFQTFEALTGATIIYVIISVIALFMARLLEKVTAVPGYIT Sbjct: 181 VALTIGLVELTAATYSMREFTFQTFEALTGATIIYVIISVIALFMARLLEKVTAVPGYIT 240 Query: 241 GGSTSAGGH 249 GGSTSAGGH Sbjct: 241 GGSTSAGGH 249 >gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 241 Score = 231 bits (589), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 162/239 (67%), Gaps = 4/239 (1%) Query: 1 MHYNWNWGIFWEMSPDGIPYIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWV 60 M Y W W +F + G Y+D LL+GL T+A AWI+AL+LGT G LRT + Sbjct: 1 MAYQWQWSVFLQAPSTGQTYLDWLLSGLGVTVALGLSAWILALVLGTFLGILRTLPNRAL 60 Query: 61 VRIANGYVELFRNIPLLVQMFLWYFVMPELLPAFIGDWIKSLPD--ASFVTATLALGFFT 118 A YVELFRN+PLLVQ+F+WYF MPELLP GD +K+LP FV A L LG FT Sbjct: 61 SGFAACYVELFRNVPLLVQIFIWYFAMPELLP--WGDAVKALPPMTQQFVMAMLCLGMFT 118 Query: 119 SSRVAVQVTTGIQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKN 178 ++RV QV +GI++LPRGQ+ AG ALGLT QTY +VLLPMA RI++P LT+EF I KN Sbjct: 119 AARVCEQVRSGIESLPRGQKGAGLALGLTLGQTYLFVLLPMAMRIVLPPLTSEFLNIFKN 178 Query: 179 SSVALTIGLVELTAATYSMREFTFQTFEALTGATIIYVIISVIALFMARLLEKVTAVPG 237 S+VA TIGL+EL A + ++T Q +EA T+ Y++I++ + + R+LE+ T++PG Sbjct: 179 SAVASTIGLLELAAQGRQLVDYTAQPYEAFIAVTLAYMLINICVMSLMRILERKTSLPG 237 >gi|300313536|ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 223 Score = 98.2 bits (243), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 116/211 (54%), Gaps = 12/211 (5%) Query: 20 YIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKP-WVVRIANGYVELFRNIPLLV 78 Y D ++ G+ T+ A ++ + +G IFG T P W+ + +GYVE+ RN P LV Sbjct: 13 YTDVIVKGVATTIELIAIGGVLGVAVG-IFGAWARTQGPGWLKPVVSGYVEIIRNTPFLV 71 Query: 79 QMFLWYFVMPELLPAFIGDWIKSLPDASFVTATLALGFFTSSRVAVQVTTGIQALPRGQR 138 Q+F +F +P L D S A+ V + LG +++ + G+QA+PRGQ Sbjct: 72 QLFFIFFGLPSL------DIHISEITAAIVAMVINLGAYSTE----IIRAGVQAIPRGQI 121 Query: 139 MAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATYSMR 198 A +L ++ +Q +R+++L A + I PAL+++ ++ S+V I + EL+ A ++ Sbjct: 122 EAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFIQ 181 Query: 199 EFTFQTFEALTGATIIYVIISVIALFMARLL 229 F+ FEA AT IY++++++ + RL+ Sbjct: 182 GRNFRAFEAYIVATAIYLVLAILLRQVLRLI 212 >gi|300312812|ref|YP_003776904.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 9/213 (4%) Query: 22 DTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWVVRIANGYVELFRNIPLLVQMF 81 D LL LK TL A + ++ GT+ +R + + A GYV LFR+IPL V + Sbjct: 20 DGLLVSLKITL----VAIVFGMVWGTLLAMMRLSRHSPLQWFAAGYVNLFRSIPL-VMVL 74 Query: 82 LWYF-VMPELLPAFIGDWIKSLPDASFVTATLALGFFTSSRVAVQVTTGIQALPRGQRMA 140 LW+F ++P+LL G + D +A +A F ++ A + GI ++ RGQ A Sbjct: 75 LWFFLIVPQLLQKLFG--LSPANDLRMTSALVAFALFEAAYYAEIIRAGINSVSRGQMAA 132 Query: 141 GAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATYSMREF 200 ALGLT Q V+LP AFR ++P L + + +++S+ L + YS+ E Sbjct: 133 AYALGLTYPQAMGMVILPQAFRNMVPLLLTQGIVLFQDTSLVYVSALADFFGRAYSIGER 192 Query: 201 TFQTFEALTGATIIYVIISV-IALFMARLLEKV 232 + E L A +Y II ++L + R +KV Sbjct: 193 NGRIIEMLFVAGAVYFIICFSMSLMVKRYRKKV 225 >gi|300313611|ref|YP_003777703.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 247 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 18/226 (7%) Query: 27 GLKWTLATAACAWIMALILGTIFGTLR---TTTKPW-----VVR-IANGYVELFRNIPLL 77 G+ TL + + ++ ++G + G LR PW +R +A YV FR PL Sbjct: 18 GVLMTLQVSLISILIGTVIGLLVGMLRLAEVQHGPWKWPLKSMRWLAGFYVAFFRGTPLF 77 Query: 78 VQMFLWYF-VMPELLPA-----FIGDWIKSLPD--ASFVTATLALGFFTSSRVAVQVTTG 129 VQ+ L +F VMP L+ G+ +++ +F++ T+AL + ++ G Sbjct: 78 VQIMLIHFAVMPVLVQQEHGLLITGELARTIKQDYGAFLSGTVALSLNAGAYISEIFRAG 137 Query: 130 IQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVE 189 IQ++ RGQ A A+LG+ T RYV+LP AFR ++P L NE ++K+SS+ IGL E Sbjct: 138 IQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEAITLLKDSSLVSAIGLAE 197 Query: 190 LTAATYSMREFTFQTFEALTGATIIYVIISV-IALFMARLLEKVTA 234 L A ++ + +E +++Y +++ +AL +ARL K +A Sbjct: 198 LAYAARTVAGTYARYWEPYITISVLYFSMTICLALVVARLESKYSA 243 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.139 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 778,127 Number of extensions: 30377 Number of successful extensions: 186 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 19 Length of query: 249 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 166 Effective length of database: 1,226,865 Effective search space: 203659590 Effective search space used: 203659590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)