BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0027.p (231 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313149|ref|YP_003777241.1| glutamate/aspartate ABC transpo... 461 e-131 gi|300312812|ref|YP_003776904.1| glutamate/aspartate ABC transpo... 216 1e-57 gi|300312809|ref|YP_003776901.1| glutamine ABC transporter perme... 110 7e-26 gi|300313611|ref|YP_003777703.1| amino acid ABC transporter perm... 108 5e-25 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 104 6e-24 >gi|300313149|ref|YP_003777241.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 461 bits (1186), Expect = e-131, Method: Compositional matrix adjust. Identities = 231/231 (100%), Positives = 231/231 (100%) Query: 1 MFSNFDFDVIQRSWFYLFTTGLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATT 60 MFSNFDFDVIQRSWFYLFTTGLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATT Sbjct: 1 MFSNFDFDVIQRSWFYLFTTGLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATT 60 Query: 61 YVNLIRSIPLVLVIFWFYFLVPFIGAWMIGASEPIQVGAFQSALITFILFEAAYYCEIMR 120 YVNLIRSIPLVLVIFWFYFLVPFIGAWMIGASEPIQVGAFQSALITFILFEAAYYCEIMR Sbjct: 61 YVNLIRSIPLVLVIFWFYFLVPFIGAWMIGASEPIQVGAFQSALITFILFEAAYYCEIMR 120 Query: 121 SGIQSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNMTPILLTQTIVLFQDVSLVYVLGS 180 SGIQSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNMTPILLTQTIVLFQDVSLVYVLGS Sbjct: 121 SGIQSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNMTPILLTQTIVLFQDVSLVYVLGS 180 Query: 181 VPDFVTSASKIAQRDGRLVEMYLFVAVVYFVLSFGLSTLVKRFQKKIAIIR 231 VPDFVTSASKIAQRDGRLVEMYLFVAVVYFVLSFGLSTLVKRFQKKIAIIR Sbjct: 181 VPDFVTSASKIAQRDGRLVEMYLFVAVVYFVLSFGLSTLVKRFQKKIAIIR 231 >gi|300312812|ref|YP_003776904.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 216 bits (550), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 114/228 (50%), Positives = 152/228 (66%), Gaps = 2/228 (0%) Query: 1 MFSNFDFDVIQRSWFYLFTTGLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATT 60 M FDF + + + GL +L +T A+ G++ GTLLAMMRLS + PL + A Sbjct: 1 MAYEFDFSAVTPAALRVLGDGLLVSLKITLVAIVFGMVWGTLLAMMRLSRHSPLQWFAAG 60 Query: 61 YVNLIRSIPLVLVIFWFYFLVPFIGAWMIGASEPIQVGAFQSALITFILFEAAYYCEIMR 120 YVNL RSIPLV+V+ WF+ +VP + + G S P SAL+ F LFEAAYY EI+R Sbjct: 61 YVNLFRSIPLVMVLLWFFLIVPQLLQKLFGLS-PANDLRMTSALVAFALFEAAYYAEIIR 119 Query: 121 SGIQSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNMTPILLTQTIVLFQDVSLVYVLGS 180 +GI S+ RGQ+ A YA+G+ Y Q MG V+LPQAFRNM P+LLTQ IVLFQD SLVYV + Sbjct: 120 AGINSVSRGQMAAAYALGLTYPQAMGMVILPQAFRNMVPLLLTQGIVLFQDTSLVYV-SA 178 Query: 181 VPDFVTSASKIAQRDGRLVEMYLFVAVVYFVLSFGLSTLVKRFQKKIA 228 + DF A I +R+GR++EM VYF++ F +S +VKR++KK+A Sbjct: 179 LADFFGRAYSIGERNGRIIEMLFVAGAVYFIICFSMSLMVKRYRKKVA 226 >gi|300312809|ref|YP_003776901.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 110 bits (276), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 10/227 (4%) Query: 4 NFDFDVIQRSWFYLFTTGLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATTYVN 63 +FDF VI S L G K T+++T + + GG ++G L +MR N L I YV Sbjct: 2 DFDFSVITDSLPALLE-GAKVTVLITAAGLVGGTLVGLLAGLMRAYGNTLLKGIGFGYVE 60 Query: 64 LIRSIPLVLVIFWFYFLVPFIGAWMIGASEPIQVGAFQSALITFILFEAAYYCEIMRSGI 123 +R P+V+ + + YF +P ++G I+V +A+ + ++ AY EI+R Sbjct: 61 FVRGTPIVVQVMFIYFALPV----LLG----IRVDPMTAAVTSIVVNSGAYIAEIVRGAF 112 Query: 124 QSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNMTPILLTQTIVLFQDVSLVYVLGSVPD 183 S+PRG AG A+G+ W+++ V+ P A R M P + Q IV +D SL V+G V + Sbjct: 113 LSVPRGLREAGLALGLPVWRVLAFVIGPVAIRRMVPAMGNQFIVSLKDTSLFIVIG-VGE 171 Query: 184 FVTSASKIAQRDGRLVEMYLFVAVVYFVLSFGLSTLVKRFQKKIAII 230 +I + R VE+++ VA +Y + ++ ++ F+K++ I+ Sbjct: 172 LTRQGQEIMAANFRAVEIWIAVAAIYLCMIGVMTYALRTFEKRMRIL 218 >gi|300313611|ref|YP_003777703.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 247 Score = 108 bits (269), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 126/241 (52%), Gaps = 20/241 (8%) Query: 4 NFDFDVIQRSWFYLFTTGLKFTLILTFSAMAGGIILGTLLAMMRLSSN---------KPL 54 +F + +IQ + LF G+ TL ++ ++ G ++G L+ M+RL+ K + Sbjct: 2 DFRWSIIQ-GYAPLFAKGVLMTLQVSLISILIGTVIGLLVGMLRLAEVQHGPWKWPLKSM 60 Query: 55 SFIATTYVNLIRSIPLVLVIFWFYFLV-PFI-----GAWMIGA-SEPIQ--VGAFQSALI 105 ++A YV R PL + I +F V P + G + G + I+ GAF S + Sbjct: 61 RWLAGFYVAFFRGTPLFVQIMLIHFAVMPVLVQQEHGLLITGELARTIKQDYGAFLSGTV 120 Query: 106 TFILFEAAYYCEIMRSGIQSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNMTPILLTQT 165 L AY EI R+GIQSI RGQ +A ++GMNY M VVLPQAFR M P L + Sbjct: 121 ALSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEA 180 Query: 166 IVLFQDVSLVYVLGSVPDFVTSASKIAQRDGRLVEMYLFVAVVYFVLSFGLSTLVKRFQK 225 I L +D SLV +G + + +A +A R E Y+ ++V+YF ++ L+ +V R + Sbjct: 181 ITLLKDSSLVSAIG-LAELAYAARTVAGTYARYWEPYITISVLYFSMTICLALVVARLES 239 Query: 226 K 226 K Sbjct: 240 K 240 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 104 bits (259), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 115/210 (54%), Gaps = 10/210 (4%) Query: 18 FTTGLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATTYVNLIRSIPLVLVIFWF 77 G+ +TL+ ++M GG++LG +LA+ R+ +P+ + A YV+++R PL++ IF Sbjct: 16 LAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGTPLLVQIFVV 75 Query: 78 YFLVPFIGAWMIGASEPIQVGAFQSALITFILFEAAYYCEIMRSGIQSIPRGQVFAGYAI 137 Y+ +P +G I+ + ++T L +AY E +R I + RGQ A +++ Sbjct: 76 YYGLPGMG---------IEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSV 126 Query: 138 GMNYWQMMGNVVLPQAFRNMTPILLTQTIVLFQDVSLVYVLGSVPDFVTSASKIAQRDGR 197 G+ Y+Q + +++PQA R P + I L +D SLV V+ +V + + + ++ R Sbjct: 127 GLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVI-TVTELMLATKEVIAVTFR 185 Query: 198 LVEMYLFVAVVYFVLSFGLSTLVKRFQKKI 227 + +Y+ A +Y++LS L R +KK+ Sbjct: 186 PLPLYVAAAAIYWMLSLCFEALQHRLEKKL 215 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.333 0.144 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 640,638 Number of extensions: 24801 Number of successful extensions: 190 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 19 Length of query: 231 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 149 Effective length of database: 1,231,600 Effective search space: 183508400 Effective search space used: 183508400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 129 (54.3 bits)