BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0026.p
         (242 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transpo...   166   1e-42
gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC transpo...   114   7e-27
gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa...    80   2e-16
gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa...    77   9e-16
gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas...    76   2e-15

>gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC
          transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  166 bits (420), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60
          MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV
Sbjct: 1  MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60

Query: 61 DGVSVGDPKTNLSKLR 76
          DGVSVGDPKTNLSKLR
Sbjct: 61 DGVSVGDPKTNLSKLR 76


>gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC
          transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  114 bits (285), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 62/76 (81%)

Query: 1  MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60
          MI L +VSK+YG F+VL+ C+  + KG+VVVVCGPSGSGKSTLIKT+N LEP Q+G+IT+
Sbjct: 1  MITLQDVSKYYGDFKVLSACNAVIAKGEVVVVCGPSGSGKSTLIKTINALEPIQEGSITI 60

Query: 61 DGVSVGDPKTNLSKLR 76
          DGV V D  TNL +LR
Sbjct: 61 DGVKVNDRSTNLPRLR 76


>gi|300310496|ref|YP_003774588.1| amino acid ABC transporter
          ATPase [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 79.7 bits (195), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 53/76 (69%)

Query: 1  MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60
          MIE+  +SK +G  +VL D S SV +G+VV + GPSGSGKST+++ +NGLE +++G I +
Sbjct: 1  MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60

Query: 61 DGVSVGDPKTNLSKLR 76
          DG  V     ++ +LR
Sbjct: 61 DGQRVDRDGPDIHRLR 76


>gi|300310829|ref|YP_003774921.1| amino acid ABC transporter
          ATPase [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score = 77.4 bits (189), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 53/82 (64%)

Query: 1  MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60
          ++E+NN++K +GS QVL   S SV++G VV + G SGSGKST+++ +NGLE    G+ITV
Sbjct: 3  IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62

Query: 61 DGVSVGDPKTNLSKLRRASAWC 82
           G  +     +L +LR+     
Sbjct: 63 AGHKLTHKHEHLIELRKDVGMV 84


>gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase
          [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score = 76.3 bits (186), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 47/65 (72%)

Query: 1  MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60
          M+E  +VSK +GS  VL   + +++KG+VVV+ GPSGSGKSTL++ +N LE    G + V
Sbjct: 1  MVEFKSVSKRFGSNVVLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGGDLLV 60

Query: 61 DGVSV 65
          DG+SV
Sbjct: 61 DGISV 65


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.130    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 441,071
Number of extensions: 11671
Number of successful extensions: 236
Number of sequences better than 1.0e-08: 16
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 16
Length of query: 242
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,226,865
Effective search space: 195071535
Effective search space used: 195071535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)