BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0019.p
         (345 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313142|ref|YP_003777234.1| N-acetyl-gamma-glutamyl-phospha...   709   0.0  
gi|300312103|ref|YP_003776195.1| N-acetyl-gamma-glutamyl-phospha...    70   3e-13

>gi|300313142|ref|YP_003777234.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/345 (100%), Positives = 345/345 (100%)

Query: 1   MIKVGIVGGTGYTGVELLRIFATHPEARVQAVTSRKEDGMPVAEMYPSLRGRVDVAFSSP 60
           MIKVGIVGGTGYTGVELLRIFATHPEARVQAVTSRKEDGMPVAEMYPSLRGRVDVAFSSP
Sbjct: 1   MIKVGIVGGTGYTGVELLRIFATHPEARVQAVTSRKEDGMPVAEMYPSLRGRVDVAFSSP 60

Query: 61  DKARLTDCDVVFFATPHGVAMAQAPELVAAGVKVIDLAADFRMQDVAAFEKWYKLPHSCT 120
           DKARLTDCDVVFFATPHGVAMAQAPELVAAGVKVIDLAADFRMQDVAAFEKWYKLPHSCT
Sbjct: 61  DKARLTDCDVVFFATPHGVAMAQAPELVAAGVKVIDLAADFRMQDVAAFEKWYKLPHSCT 120

Query: 121 DLLKEAAYGLPELNREAIRKARVVGNPGCYPTTMQLGYAPLLKAGVIDASHLIADCKSGV 180
           DLLKEAAYGLPELNREAIRKARVVGNPGCYPTTMQLGYAPLLKAGVIDASHLIADCKSGV
Sbjct: 121 DLLKEAAYGLPELNREAIRKARVVGNPGCYPTTMQLGYAPLLKAGVIDASHLIADCKSGV 180

Query: 181 SGAGRKAELSLLFSEASDNFKAYGVSGHRHSPETIERLSHLTSDKVGLLFTPHLVPMIRG 240
           SGAGRKAELSLLFSEASDNFKAYGVSGHRHSPETIERLSHLTSDKVGLLFTPHLVPMIRG
Sbjct: 181 SGAGRKAELSLLFSEASDNFKAYGVSGHRHSPETIERLSHLTSDKVGLLFTPHLVPMIRG 240

Query: 241 MHSTLYARLTKEIDNAALQALFEDAYKDEPFVDVLPFGAHPETRTTRASNMLRLAVHRPG 300
           MHSTLYARLTKEIDNAALQALFEDAYKDEPFVDVLPFGAHPETRTTRASNMLRLAVHRPG
Sbjct: 241 MHSTLYARLTKEIDNAALQALFEDAYKDEPFVDVLPFGAHPETRTTRASNMLRLAVHRPG 300

Query: 301 DGDTVVVLVVQDNLVKGASGQAVQCMNLMFGLDETTGLQQVPVLP 345
           DGDTVVVLVVQDNLVKGASGQAVQCMNLMFGLDETTGLQQVPVLP
Sbjct: 301 DGDTVVVLVVQDNLVKGASGQAVQCMNLMFGLDETTGLQQVPVLP 345


>gi|300312103|ref|YP_003776195.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 147/345 (42%), Gaps = 66/345 (19%)

Query: 6   IVGGTGYTGVELLRIFATHPEARVQAVTSRKEDGMPVAEMYPSLRGRVDVAFSSPDKARL 65
           I G  G TG+++          R++A    +   +P AE   + R R + A +S D A L
Sbjct: 9   IDGDQGTTGLQI--------HERLRARQDLRVLTLPAAERKDAQR-RAE-AINSADIALL 58

Query: 66  TDCDVVFFATPHGVAMAQAPELVAAGVKVIDLAADFRMQDVAAFEKWYKLPHSCTDLLKE 125
              D    A    VAM   P      V+VID ++  R         W             
Sbjct: 59  CLPDA---AAREAVAMISNPR-----VRVIDASSAHRTS-----PDW------------- 92

Query: 126 AAYGLPEL---NREAIRKARVVGNPGCYPTTMQLGYAPLLKAGVIDASH-LIADCKSGVS 181
             YG PE+     EAI  A  V NPGCYPT       PL++AG++ A + L     SG S
Sbjct: 93  -VYGFPEMAAGQAEAIATALRVSNPGCYPTGAIALLRPLVQAGLVPADYPLNIHAVSGYS 151

Query: 182 GAGRKAELSLLFSEASDN--FKAYGVS-GHRHSPETIERLSHLTSDKVGLLFTPHLVPMI 238
           G GR        +EA+    F  YG+   H+H PE   +L    S +   LF P      
Sbjct: 152 GGGRAQVEQYEGAEAAHAAPFVTYGLGLQHKHPPEM--QLHAGLSQRP--LFVPSYGAFR 207

Query: 239 RGMHST-------LYARLTKEIDNAALQALFEDAYKDEPFVDVLPFGAHPETRT----TR 287
           +G+  T       L A+ + E   A LQA ++ A+    +V VL   A  E+ T    TR
Sbjct: 208 QGIVLTIALQSRLLPAQASLERLRATLQAHYDGAH----YVTVLD-AAQSESTTQLDPTR 262

Query: 288 --ASNMLRLAVHRPGDGDTVVVLVVQDNLVKGASGQAVQCMNLMF 330
              SN + L V        +++  V DNL KGASG AVQ ++LM 
Sbjct: 263 HNHSNQMSLGVFGHAGHGHILLCAVFDNLGKGASGAAVQNLDLML 307


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,049,603
Number of extensions: 43959
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,212,660
Effective search space: 314078940
Effective search space used: 314078940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)